Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F01
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   226   1e-61
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   226   1e-61
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   1.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.3  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  226 bits (552), Expect = 1e-61
 Identities = 104/122 (85%), Positives = 113/122 (92%)
 Frame = +3

Query: 102 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 281
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 282 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNLA 461
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF GNLA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 462 SG 467
           SG
Sbjct: 121 SG 122



 Score = 29.1 bits (62), Expect = 0.027
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 466 GGAAGATSLCFV 501
           GGAAGATSLCFV
Sbjct: 122 GGAAGATSLCFV 133



 Score = 28.7 bits (61), Expect = 0.036
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 129 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 308
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 309 LSFWRGNFANVIRYFPTQALNFAFKD 386
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.084
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 189 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 347
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  226 bits (552), Expect = 1e-61
 Identities = 104/122 (85%), Positives = 113/122 (92%)
 Frame = +3

Query: 102 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 281
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 282 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFAGNLA 461
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF GNLA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 462 SG 467
           SG
Sbjct: 121 SG 122



 Score = 29.1 bits (62), Expect = 0.027
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 466 GGAAGATSLCFV 501
           GGAAGATSLCFV
Sbjct: 122 GGAAGATSLCFV 133



 Score = 28.7 bits (61), Expect = 0.036
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 129 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 308
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 309 LSFWRGNFANVIRYFPTQALNFAFKD 386
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.084
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 189 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 347
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 9   SGVSVSVIPHPRVPQLPPRHIHLVKIT 89
           +G   S+I  P   +LPP H H   +T
Sbjct: 86  TGFGGSIITIPPTRKLPPLHPHTAMVT 112


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 491 REVAPAAPPGGQITSEVTPELR 426
           ++++PA P G + +   TPE++
Sbjct: 272 KKLSPATPKGSKCSMITTPEIK 293


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 494 HREVAPAAPPGGQITSEVTP 435
           H ++  + P GG + + VTP
Sbjct: 143 HEKLVESFPRGGSLPTPVTP 162


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 303 PAPWGCGRRRRR 268
           P P GC RRR R
Sbjct: 1   PGPNGCPRRRGR 12


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 225 HVSKQIAADQRYKGIVDAFVRIPK 296
           ++ K IAA   +KG+     RIP+
Sbjct: 763 YIQKMIAAAAPFKGMETQDYRIPE 786


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,033
Number of Sequences: 438
Number of extensions: 2660
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)