Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_E22
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 140 8e-35
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 140 8e-35
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 106 1e-24
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 106 1e-24
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 106 1e-24
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 67 1e-12
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 39 4e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 38 7e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 36 0.002
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 29 0.31
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 1.6
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 5.0
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 25 5.0
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 8.8
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 24 8.8
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 24 8.8
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 24 8.8
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 140 bits (339), Expect = 8e-35
Identities = 70/112 (62%), Positives = 80/112 (71%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXX 210
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Query: 211 XXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEXCGA 366
Y+TP LAVL++YKV+++G + RLRREC CGA
Sbjct: 77 GKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CGA 126
Score = 30.7 bits (66), Expect = 0.10
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 374 FMAVMEDRHYCGKCHXTM 427
FMA +DR YCG+CH T+
Sbjct: 129 FMANHKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 140 bits (339), Expect = 8e-35
Identities = 70/112 (62%), Positives = 80/112 (71%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXX 210
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Query: 211 XXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEXCGA 366
Y+TP LAVL++YKV+++G + RLRREC CGA
Sbjct: 77 GKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CGA 126
Score = 30.7 bits (66), Expect = 0.10
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 374 FMAVMEDRHYCGKCHXTM 427
FMA +DR YCG+CH T+
Sbjct: 129 FMANHKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 106 bits (255), Expect = 1e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 192
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 106 bits (255), Expect = 1e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 192
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 106 bits (255), Expect = 1e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 192
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 1e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 192
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 1e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 192
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 1e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 192
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 106 bits (255), Expect = 1e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 192
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 321 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 67.3 bits (157), Expect = 1e-12
Identities = 25/54 (46%), Positives = 41/54 (75%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 192
++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 17 IDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 38.7 bits (86), Expect = 4e-04
Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +1
Query: 40 SDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 174
+DT I +K KIQ ++ +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 20 ADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 37.9 bits (84), Expect = 7e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 192
V+ ++ +K I I +QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 36.3 bits (80), Expect = 0.002
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 31 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 183
+EP++T +K ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 17 IEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 29.1 bits (62), Expect = 0.31
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 286 VLRFYKVDENGKIHRLR--RECTGEXCGAGIVHGGDGGP 396
V+ Y+V+ NGK H+++ R G I+HGG P
Sbjct: 255 VMESYEVEINGKTHQVKSIRNLCGHNLDPYIIHGGKSVP 293
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 172 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 86
PS + PRG V+ P+ ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 94 PNQQRLIFAGKQLEDGRTLSDYNI 165
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 25.0 bits (52), Expect = 5.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 37 PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 189
P DT+ + K + + G P + L +D TL+DY I +L +
Sbjct: 20 PDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 78 QRGNPSQSTEVDLCWKAAGRW 140
+R T VDL W+AAG++
Sbjct: 1169 ERAIDPSGTNVDLLWRAAGKF 1189
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/27 (29%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -3
Query: 151 RGYVHLPAA-FQQRSTSVDWEGFPLCL 74
RG + P++ ++++ ++DW+ PLC+
Sbjct: 67 RGKIGSPSSSIRKQNDTIDWKNSPLCV 93
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 307 DENGKIHRLRRECTGEXCGAGIVHGGDGGPSLLREVSXHDGL 432
D++G+ H + C E AG+ D G L+ + + HD +
Sbjct: 84 DDDGEKHYI---CNYEDIEAGVCKDDDYGLYLINQTAPHDSI 122
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 90 PSQSTEVDLCWKAAGRWTYPLGLQYPEGIHPPPGVEAS 203
PSQ+ V K+ +Y L G +PPP V +S
Sbjct: 47 PSQTITVKKSKKSTNSSSYFAQLHAASGQNPPPSVHSS 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,413
Number of Sequences: 5004
Number of extensions: 26680
Number of successful extensions: 81
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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