Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_E12
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 31 0.11
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 29 0.44
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 29 0.77
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.0
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 28 1.3
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 1.8
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 27 3.1
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 4.1
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 26 5.4
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 26 5.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 7.2
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 9.5
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 242 IVYERSFMLSLRQSPISQTPPQCALPAALLKNPSS 346
I+ E+S + +Q P S PP+ ALPA + PSS
Sbjct: 236 ILREQSKQIPTQQKPSSLPPPERALPAPTMPTPSS 270
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 254 RSFMLSLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 397
+S + SL +P S T Q + L+ PSS AQ KP N I
Sbjct: 217 QSTLFSLNTAPFSATSQQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEI 264
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 387 DRGFCVL-AGCALGTEDGFFSRAAGSAHCGG-VWEIGDCRRDNMNDL 253
D C++ AG + GF R +A C G VW I CR +++L
Sbjct: 429 DGPMCLIGAGVGIAPFRGFVQRRLANAACTGKVWIIQGCRDQKLDEL 475
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 269 SLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 397
S R S QTPP LP+ LL + P+A P +P+ NS+
Sbjct: 15 SKRSSRKRQTPPMPELPSFLL----AFPHAPPLGFLRPKLNSL 53
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 345 EDGFFSRAAGSAHCGGVWE 289
ED F+++A+G+ + GG W+
Sbjct: 36 EDNFYAKASGNLYLGGTWK 54
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +2
Query: 167 PAQMPDVYSSTPGGTIYSTTPGGTRI--VYERSFMLSLRQSPISQTPPQCALPAALLKNP 340
PA P+ S P +I + P T + YE+ LS P A PA + P
Sbjct: 300 PAPAPESEPSKP--SIAPSQPSKTNVSAAYEKPAELSSSSVPFPHKSQDSATPANVETTP 357
Query: 341 SSVPNAQPASTQKPRSNSI 397
S+ +A ST N++
Sbjct: 358 STATSAPKKSTAPFAINAV 376
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 275 RQSPISQTPPQCALPAALLKNPS-SVPNAQPASTQKPRSNSIS 400
R+ P + +CA+ +LKNP+ S+ A ST +P S +S
Sbjct: 298 RERPGNTHAEECAIEKFMLKNPTDSLEGAIMYSTMEPCSKRLS 340
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 101 HLSRGRPPTANRFLQGRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSF 262
H+S G A GR ++ D PD ST + S++ + ++R F
Sbjct: 193 HISSGFAALAYSLCLGRRIVVDEPDRPDSIRSTDNADLPSSSQNNCKANWKRWF 246
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 152 VLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQT 298
VL+TD +P+V+SS G + P +R + E + ISQ+
Sbjct: 109 VLVTDEQDVPEVWSSKSLGKLEGFMPELSRQIVETDRSVMEHVDKISQS 157
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 281 SPISQTPPQCALPAALLKNPSSV 349
+P P CALPA LK P S+
Sbjct: 247 NPYGFMEPDCALPADPLKTPMSI 269
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 284 PISQTPPQCALPAALLKNPSSVPNAQPASTQKP 382
PI + P A PAA +K+P S P+ A P
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 351 PTRSRPAHKNLDLTRYHSTSRRKPSA 428
PT++ PA+ DLT Y R KP A
Sbjct: 1314 PTKTGPANVFPDLTGYTPVDRAKPVA 1339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,980
Number of Sequences: 5004
Number of extensions: 57763
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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