Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_E06
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 137 1e-33
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 75 1e-14
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 3e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 55 9e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 51 1e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 50 3e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 45 1e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 43 3e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 42 9e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 42 9e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 41 1e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 2e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 5e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 34 0.018
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 33 0.024
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 32 0.056
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 30 0.30
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 29 0.69
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 27 1.6
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 26 3.7
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 3.7
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 3.7
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 4.8
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 26 4.8
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 25 6.4
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 137 bits (331), Expect = 1e-33
Identities = 59/108 (54%), Positives = 78/108 (72%)
Frame = +1
Query: 277 PGASLRKPKWDLSRLKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTF 456
PGA+L K W L PF+KDFY H +V R +++V +R E EI + G N+PKP TF
Sbjct: 65 PGANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTF 124
Query: 457 DEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
+EAGFP+YV+ E+ ++GF PTPIQ Q WP+A+SG DMVGI++TGSGK
Sbjct: 125 EEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGK 172
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 74.5 bits (175), Expect = 1e-14
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +1
Query: 328 FKKDFYVPHLDVEKRPESDVEAWRSENE-ITLKGRNIPKPTLTFDEAGFPDYVMDEIDKM 504
FKKDFYV +++ ++V+ R+ + I ++G + PKP ++ + G + I+ +
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 505 GFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
G+ KPT IQAQ P SG D++G+A TGSGK
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAKTGSGK 468
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.7 bits (138), Expect = 3e-10
Identities = 26/80 (32%), Positives = 45/80 (56%)
Frame = +1
Query: 361 VEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQG 540
+E D + + I++KG ++P P ++EAG P ++ + K+ + +P+ IQ
Sbjct: 220 LEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAA 279
Query: 541 WPIALSGHDMVGIASTGSGK 600
P+ L D++GIA TGSGK
Sbjct: 280 IPVLLQRKDLIGIAETGSGK 299
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 54.8 bits (126), Expect = 9e-09
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +1
Query: 451 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
TF E G D + + +K+GF PTPIQ + P+ L+ D++G+A TGSGK
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGK 96
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +1
Query: 442 PTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
P L FDE + + + + +PTPIQA WP L+G D+VGIA TGSGK
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGK 215
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 49.6 bits (113), Expect = 3e-07
Identities = 26/66 (39%), Positives = 34/66 (51%)
Frame = +1
Query: 403 ENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIA 582
E+ KG+ F G ++ I K GF PTPIQ + P+ L G D+VG+A
Sbjct: 54 ESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMA 113
Query: 583 STGSGK 600
TGSGK
Sbjct: 114 RTGSGK 119
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 412 ITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTG 591
+ + G +I +P F +++ I G+ +PTP+Q PI SG D++ A TG
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 592 SGK 600
SGK
Sbjct: 217 SGK 219
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 451 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
TF + + I K F KPT +Q++ P+AL G D+V A TGSGK
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGK 64
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 41.5 bits (93), Expect = 9e-05
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +1
Query: 481 VMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
++ + +GF PT IQ + P+AL G D+VG A TGSGK
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 41.5 bits (93), Expect = 9e-05
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +1
Query: 481 VMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
++ + K GF+KP PIQ+ P A G D++G A TGSGK
Sbjct: 133 MLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGK 172
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 493 IDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
I + GF +P+PIQ + PIALSG D++ A G+GK
Sbjct: 59 IFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 40.3 bits (90), Expect = 2e-04
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +1
Query: 376 ESDVEAWRSENEITLKGRNIP-KPTLTFDEAGFPDYVMDE-----IDKMGFAKPTPIQAQ 537
ES+ E +ENE +++ + T D F D + E I +MGF T IQ +
Sbjct: 59 ESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKR 118
Query: 538 GWPIALSGHDMVGIASTGSGK 600
P L+G D++G A TGSGK
Sbjct: 119 SIPPLLAGRDVLGAAKTGSGK 139
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 448 LTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
++F ++ + + GF K TP+QA P+ L D+V A TGSGK
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGK 51
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 33.9 bits (74), Expect = 0.018
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +1
Query: 508 FAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
F T IQ Q P AL G D++G A TGSGK
Sbjct: 59 FITLTEIQKQCIPSALKGRDILGAAKTGSGK 89
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 451 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
+F + G +++D + + +PT IQ L G + +G A TGSGK
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGK 57
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 32.3 bits (70), Expect = 0.056
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 451 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSG--HDMVGIASTGSGK 600
+F+E ++ I M F KP+ IQ + P+ LS +M+G + +G+GK
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGK 166
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 304 WD--LSRLKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPT 447
WD LSR FK YVP+ DV S + W + + NIP P+
Sbjct: 505 WDYFLSRKDEFKNPNYVPYDDVIMPDPSSLRWWSASFAQPDENMNIPSPS 554
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 28.7 bits (61), Expect = 0.69
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 459 IKSKCWFWYISTFQSNFIFTSPGFNIRFRSLFNV*MWDIKIFLKWF*T 316
I KCW YI+ + + F F G+N + + NV + D ++W T
Sbjct: 198 IPEKCWNEYITAYDNKFSFPEIGWNNKL--VGNVYLIDDSCKIRWLGT 243
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 451 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 600
+F+E + ++ I G+ P+ +Q++ G D++ A +G+GK
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGK 71
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 439 KPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGW-PIALSGHDMVGIASTGSGK 600
+PTL + A + + + GF K TP+Q + + + + V A TG+GK
Sbjct: 35 QPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGK 89
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 388 EAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDK 501
E + N ++ N+ K ++T +A FP DEID+
Sbjct: 927 EVYEIPNVTIIENGNMFKESMTLSKAAFPLKPFDEIDR 964
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 417 SNFIFTSPGFNIRFRSLFNV 358
SNF FTS FN+ +R +F V
Sbjct: 375 SNFSFTSVSFNLPYRMVFAV 394
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 499 KMGFAKPTPIQAQGWPIALS 558
K+ FA P+P AQGW AL+
Sbjct: 781 KLRFAGPSPKDAQGWIDALN 800
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 425 PFKVISFSLLQASTSDSGLFSTSKCGT*KSFLNGFKRLKSH 303
PF + + A T D+ L + CGT S L+ F + H
Sbjct: 158 PFSPEIYEAVHALTLDTKLRTVQSCGTNLSLLDNFYYYQDH 198
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -3
Query: 169 DCDAYHDYGPFRGPLCF*LYKR*CKTPNSNY 77
DC+ H+ P R P C C PN Y
Sbjct: 249 DCNLSHELDPRRIPACRYFLLGKCNNPNCRY 279
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 319 LKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIP 438
L PF K ++ L V ++ S V +N ITLK R+ P
Sbjct: 189 LSPFNKLYFSKSLIVPRKDVSIVTYSLQKNPITLKIRDRP 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,125
Number of Sequences: 5004
Number of extensions: 40976
Number of successful extensions: 111
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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