Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_E05
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   6.7  
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass...    24   8.9  

>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 426 WLNYFHXLFFDRFSGSIIEQFII*CSVLF 340
           ++N+   L   R   S  E+F++ C++ F
Sbjct: 759 YINHIFFLLLSRLKNSRTERFVLRCTIFF 787


>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
           assembly of the V-ATPase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 120 ELRRVKNKITKIINKLF 70
           ELR +KN+I+ IIN LF
Sbjct: 78  ELRLMKNQISAIINILF 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,201
Number of Sequences: 5004
Number of extensions: 26819
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)