Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_E03
(379 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 93 6e-20
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 93 6e-20
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 31 0.21
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 30 0.63
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 30 0.63
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 30 0.63
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z71267-9|CAA95852.2| 380|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z71262-14|CAN99672.1| 380|Caenorhabditis elegans Hypothetical p... 27 4.5
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 5.9
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 5.9
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 5.9
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 26 7.8
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 93.1 bits (221), Expect = 6e-20
Identities = 42/60 (70%), Positives = 49/60 (81%)
Frame = +1
Query: 91 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 270
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP K ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Score = 62.5 bits (145), Expect = 1e-10
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +2
Query: 239 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD 355
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVD 88
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 93.1 bits (221), Expect = 6e-20
Identities = 42/60 (70%), Positives = 49/60 (81%)
Frame = +1
Query: 91 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE 270
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP K ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Score = 62.5 bits (145), Expect = 1e-10
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +2
Query: 239 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD 355
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVD 88
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 37 KIHKIGLKIN*KRTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVK 171
K+ + G K + + K + PG V++VL+GR+ G++ + +K
Sbjct: 49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLK 93
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.9 bits (64), Expect = 0.63
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 121 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE*NPQEVQDKA 300
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 301 FREGCKL 321
R+G L
Sbjct: 231 IRQGNSL 237
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.9 bits (64), Expect = 0.63
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 121 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE*NPQEVQDKA 300
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 301 FREGCKL 321
R+G L
Sbjct: 231 IRQGNSL 237
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.9 bits (64), Expect = 0.63
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 121 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKSAQEDGKE*NPQEVQDKA 300
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 301 FREGCKL 321
R+G L
Sbjct: 231 IRQGNSL 237
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 157 PCDPRTGHLRPALLYPASLSYPS 89
P D TGH RPAL P PS
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS 572
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 200 RTGMLSSLVSTGTPGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFS 361
RT +L + + G+ H N+ KR KI + YNHL+P T+D+S
Sbjct: 377 RTVLLDANQAGVERGQNHVATHLNRQLKRQKISKLEREKIYNHLVP---TIDYS 427
>Z71267-9|CAA95852.2| 380|Caenorhabditis elegans Hypothetical
protein W01A8.6 protein.
Length = 380
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 186 YLRQAVRACFRRWYRQVPPEKCT 254
Y R + RA R+W + PE CT
Sbjct: 144 YSRTSTRAMIRQWRKNRAPENCT 166
>Z71262-14|CAN99672.1| 380|Caenorhabditis elegans Hypothetical
protein W01A8.6 protein.
Length = 380
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 186 YLRQAVRACFRRWYRQVPPEKCT 254
Y R + RA R+W + PE CT
Sbjct: 144 YSRTSTRAMIRQWRKNRAPENCT 166
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 79 NPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 180
N ++ K K G V+SGRY G ++V+ D
Sbjct: 465 NAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 79 NPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 180
N ++ K K G V+SGRY G ++V+ D
Sbjct: 465 NAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKD 498
>Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical
protein F45E6.4 protein.
Length = 333
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -3
Query: 338 LASSDYSLQPSRKALSWTSCGFYS--FPSSC 252
LAS++Y + P + A ++ +CG + FP +C
Sbjct: 195 LASANYGMCPCQHAFAFPACGMETGFFPGTC 225
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 269 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFS 361
NK KR KI K YNHL+P T+D+S
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYS 453
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 269 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFS 361
NK KR KI K YNHL+P T+D+S
Sbjct: 400 NKQVKRRKINKLEKERIYNHLVP---TIDYS 427
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 269 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFS 361
NK KR KI K YNHL+P T+D+S
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYS 453
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 290 WTSCGFY-SFPSSCALFRGYLSIPAT 216
W +C F+ + P SC L G ++ PAT
Sbjct: 112 WDNCPFFKNCPLSCGLCTGNVTTPAT 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,958,826
Number of Sequences: 27780
Number of extensions: 183939
Number of successful extensions: 508
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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