Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_D22
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    56   3e-09
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    28   1.3  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    27   3.1  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   3.1  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    26   5.4  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.4  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
 Frame = +3

Query: 114 PHTMLTLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSSKF 290
           P     + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L + F
Sbjct: 3   PPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLETSF 60

Query: 291 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLERHFCP 419
             K  GLT ++ W T N L + + + ++ A GL + +   F P
Sbjct: 61  NDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSP 103



 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +1

Query: 409 TFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQK 588
           TF+P T  KT  L     +  +  + +++      + D    + ++G+LAG    +D QK
Sbjct: 100 TFSPATAAKTAILNLEHQHPLIHTHASVNALERKFLGDFT--VGHEGFLAGAEFGYDVQK 157

Query: 589 AKFSKNNFALGY 624
              S     +GY
Sbjct: 158 GNVSNYAATIGY 169


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 202 PRASLVLNSP-AGS--PPTRKAERFLAAFPPNLQ 294
           P   L +  P AGS  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 114 PHTMLTLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGS 275
           PHT L  G+        GY   V++  L+    +G+ + +  T   E  GK+  S
Sbjct: 116 PHTKLYNGQNVVASIENGYQSNVYEFQLRLMKNNGIAWENTKTEFMEDVGKLLHS 170


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 204 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 353
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 251 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG--LLSQGQHSMGEPC 105
           L GG   G+F++ L  G++  ++ T+    AE +IG  L+++     G+ C
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTGPAGKIC 122


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 228 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 353
           T+G  +   +G V G LS    +    + F EK++ +  LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 593  FAFCVSNWVCTPASQPW*FSTAATSTTG 510
            F F  S+W   P  +PW FST A    G
Sbjct: 1677 FNFAKSHW--EPVIEPWTFSTTAIMKDG 1702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,326
Number of Sequences: 5004
Number of extensions: 54458
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)