Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_D22
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 42 6e-04
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 40 0.002
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 35 0.048
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 32 0.34
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 31 1.0
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 1.8
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 4.2
05_05_0126 + 22574191-22575567 28 5.6
05_03_0373 - 13194723-13195847,13196219-13196809 28 7.4
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330... 28 7.4
02_05_0428 + 28912746-28912971,28914132-28914301,28914462-289145... 27 9.7
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 27 9.7
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +1
Query: 433 KTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNF 612
K+GKL + +D A+N+ + L + P++++AA + AG FD+ A +K N
Sbjct: 814 KSGKLDLQYLHDHFALNSTIGLT-STPLIELAATIGTNELSAGAEVGFDSTSASVTKYNS 872
Query: 613 ALGYQSGDFA 642
+ Y DF+
Sbjct: 873 GICYNKHDFS 882
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +1
Query: 433 KTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNF 612
++GKL+ + ++ +N ++ L+ + P+V+++ V + GV FDT + F+K N
Sbjct: 101 RSGKLELQYLHEYAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNA 159
Query: 613 ALGYQSGD 636
AL + D
Sbjct: 160 ALSLTNSD 167
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +1
Query: 436 TGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFA 615
+GK++ + ++ + T + + PVV+ + QG G FDT KF+K + A
Sbjct: 140 SGKVEMQYFHENASFATAVGMK-PSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAA 198
Query: 616 LGYQSGDF 639
+G D+
Sbjct: 199 IGVTKPDY 206
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 400 LKGTFA-PQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQF 576
LKG + P K+ K + + + +N + L+ A P+V + V + G F
Sbjct: 243 LKGILSIPFPYQKSAKAEVQYLHPHAGLNAIVGLN-ANPLVSFSGVFGTGAFAVGTDVAF 301
Query: 577 DTQKAKFSKNNFALGYQSGD 636
DT F+K N L + + D
Sbjct: 302 DTATGDFTKYNAGLSHTTPD 321
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -2
Query: 595 TLLFVYQTGCVHQPANPGSLVLL 527
TLLFVYQTG P PG L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 183 FKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 344
F LDL S + G++F SG+ S + V L+ + A+KDY T+ N D T
Sbjct: 277 FHLDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFREAIKDYSTPSTKTLNRDLT 332
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 607 CSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 509
CSW + + TG V P+ G L LLQ +QL+
Sbjct: 34 CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66
>05_05_0126 + 22574191-22575567
Length = 458
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 425 VCGAKVPFKGDFKASSNLVLDCDVSS*CIVCVPLLCESQAIVFHCKFGGKAAKNLS 258
V G PF + + ++L DV+ C V P++ +++ K GKAA+ LS
Sbjct: 316 VIGETGPFLQGWVTWNQILLFVDVACCCAVLFPVVWSMRSLRETSKTDGKAARTLS 371
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 406 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 504
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
>01_06_1129 +
34732007-34732091,34732814-34732934,34733012-34733083,
34733168-34733242,34733348-34733419,34733514-34733675,
34733780-34733854,34733932-34734003,34734089-34734160,
34734245-34734313,34734388-34734462,34734557-34734628,
34734732-34734866,34734946-34735415,34735490-34735648,
34735741-34735880,34735974-34736193,34736305-34736540,
34736627-34737130
Length = 961
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = -1
Query: 578 SNWVCTPASQPW*FSTAATSTTGPAKSRSKLVFTATVSLVNEVFNFPVLVPVCGAKVPFK 399
+N++ +PA + W FST + TT S T T+ + +F+FP L + AK F
Sbjct: 297 NNFMSSPAPR-W-FSTLTSLTTLFMDSDH---LTGTIP--SALFSFPQLQQISLAKNSFS 349
Query: 398 GDFKASSNL 372
G+ SSN+
Sbjct: 350 GELNMSSNI 358
>02_05_0428 +
28912746-28912971,28914132-28914301,28914462-28914566,
28915059-28915262,28915404-28915506,28915607-28915719
Length = 306
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 276 LSSKFAVKDYGLTFTE-KWNTDNTLATDITIQDKIAAGLKVTLERHFCPTDWN*NWKIED 452
L++K+ + YG+T + + N LA + + DK++ + LE+ F ++ W +E
Sbjct: 99 LANKYGAQCYGITLSPVQAERGNALAAEQGLSDKVSFQVGDALEQPFPDGQFDLVWSMES 158
Query: 453 LIH 461
H
Sbjct: 159 GEH 161
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/68 (22%), Positives = 30/68 (44%)
Frame = +1
Query: 439 GKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFAL 618
GK + + +D ++ + L + P+V+++ V + G DT F+K + L
Sbjct: 210 GKAELQYLHDYAGISLGVGLT-SKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGL 268
Query: 619 GYQSGDFA 642
+ D A
Sbjct: 269 TINNSDLA 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,855
Number of Sequences: 37544
Number of extensions: 369329
Number of successful extensions: 899
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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