Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_D22
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.8  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 406 GTFAPQTGTKTGKLKTSFTNDTVAVNTNL 492
           GT   Q    TG    +F NDTV+  T +
Sbjct: 86  GTSESQWEDVTGSTPLTFVNDTVSFTTTV 114


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 183 FKLDLKTKSESGVEFTSGITSNQ 251
           F+LDL+ + E+G + +S IT+ +
Sbjct: 174 FQLDLQLQDEAGGDISSFITNGE 196


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 1/140 (0%)
 Frame = -1

Query: 509  PAKSRSKLVFTATVSLVNEVFNFPV-LVPVCGAKVPFKGDFKASSNLVLDCDVSS*CIVC 333
            P   +  L  T T SL  +V   P    P+ G  + +K +F       +   V       
Sbjct: 1367 PHSPQITLTATTTNSLTMKVRPHPTDNAPIHGYTIHYKPEFGDWDTAQISSTVQK--YTL 1424

Query: 332  VPLLCESQAIVFHCKFGGKAAKNLSAFLVGGDPAGEFNTRLALGLQVEFENTKVIALAED 153
              LLC S+  ++   + G            GDP+   NTR      +  E  + I +A +
Sbjct: 1425 ENLLCGSRYQIYVTAYNGIGT---------GDPSDMLNTRTKGSKPIIPEAARFIEVATN 1475

Query: 152  IIGLLSQGQHSMGEPCLCFI 93
             I L        G P + F+
Sbjct: 1476 SITLHLNAWSDGGCPMIYFV 1495


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 563 TPASQPW*FSTAATSTT 513
           +PAS P   S AATS+T
Sbjct: 822 SPASSPRYLSAAATSST 838


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 58 GILCEIIPICEFI 96
          GI CEI   CEF+
Sbjct: 59 GIKCEIYAKCEFL 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,650
Number of Sequences: 438
Number of extensions: 3903
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)