Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_D13
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    27   1.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.0  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   5.2  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   6.8  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   6.8  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   9.0  

>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 196 GMSGSPWKQTCYNMMRKQIQEEVAASIQYL 285
           GMS   W+Q C     KQ + EV  ++ ++
Sbjct: 22  GMSWRQWRQACSEEYAKQCEREVLHTVDFI 51


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 273 NPVLSHG-GLLLDRYGEPPRLREAILRC 353
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 505 KLESDVXNSIREVIXTCXSXFNDYHLVDYLSGEFLDXQ 618
           ++E DV  S++           DYH    LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 157 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 50
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 166 TVLRQPRHHQGMSGSPWKQTCYNMMRKQIQEEV 264
           T   +P H  GM   PW Q  +  ++  ++E V
Sbjct: 206 TTRSKPVHKLGMPAFPWPQADFPALKYPLEEHV 238


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 382 KLIDYLLMRGKLTGSVTNLITYRAPANTSWESGASALEHALKLESDVXNSIREVI 546
           +L DY+L R +L  SV   +  +  +  ++      +   LKLE+ + ++ R ++
Sbjct: 584 ELFDYILARRRLEDSVACRLFAQLISGVAYLHSRGVVHRDLKLENILLDTNRNIV 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,257
Number of Sequences: 5004
Number of extensions: 36167
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)