Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_D13
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 72 3e-13
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 56 2e-08
12_02_0911 + 24236374-24237582 32 0.33
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 30 1.7
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.0
12_01_0002 - 4477-6144,6571-7440 28 5.3
11_01_0003 - 6099-7766,8193-9062 28 5.3
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748... 27 9.3
01_06_1124 - 34679205-34680926,34681438-34682811 27 9.3
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 72.1 bits (169), Expect = 3e-13
Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Frame = +1
Query: 193 QGMSGSPWKQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEERE 372
Q ++ + C + +QI E AS Y ++ AYF D V GFAK F +++ EER+
Sbjct: 80 QSLARQKFVDECEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERD 139
Query: 373 HATKLIDYLLMRG---KLTGSVTNLITYRAPANTSWESGASALEHALKLESDVXNSIREV 543
HA KL+ Y MRG +L VT L + P A+E AL LE V +
Sbjct: 140 HAEKLMKYQNMRGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKLHN- 195
Query: 544 IXTCXSXFNDYHLVDYLSGEFLDXQ 618
+ + S ND L D++ EFL+ Q
Sbjct: 196 LHSVASRCNDPQLTDFVESEFLEEQ 220
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 56.4 bits (130), Expect = 2e-08
Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = +1
Query: 259 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 429
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 430 TNLITYRAPANTSWESGASALEHALKLESDVXNSIREVIXTCXSXFNDYHLVDYLSGEFL 609
T L + P E G AL L + V C ND L D++ EFL
Sbjct: 194 TPLTEFDHP-----EKG-DALYGELLSACPIYVFYSMVASRC----NDPQLTDFVESEFL 243
Query: 610 DXQ 618
+ Q
Sbjct: 244 EEQ 246
>12_02_0911 + 24236374-24237582
Length = 402
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +1
Query: 415 LTGSVTNLITYRAPANTSW--ESGASALEHA--LKLESDVXNSIREVIXTCXSXFNDYHL 582
L VTNL+ R A ++GA+A + A L+L+ S +EV +H+
Sbjct: 148 LPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHV 207
Query: 583 VDYLSGEFLDXQYKG 627
D+LS + QY G
Sbjct: 208 DDFLSDACSNEQYSG 222
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Frame = +3
Query: 183 PSPSGXEWLTM-----EADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGEPP 326
PSPS L++ E L T G S +P HGGLL YGE P
Sbjct: 159 PSPSSSSLLSLSVGSPEYSSLVRSMATSVGASAAADPSPVHGGLLAPVYGEFP 211
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 286 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 402
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>12_01_0002 - 4477-6144,6571-7440
Length = 845
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 204 WLTMEADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGEPP 326
WL + A L+ P G+G V +S ++ RY EPP
Sbjct: 568 WLILTAGFLKRSRAYGPAGAGGVAAAVSGIIIVGRRYDEPP 608
>11_01_0003 - 6099-7766,8193-9062
Length = 845
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 204 WLTMEADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGEPP 326
WL + A L+ P G+G V +S ++ RY EPP
Sbjct: 568 WLILTAGFLKRSRAYGPAGAGGVAAAVSGIIIVGRRYDEPP 608
>11_04_0154 +
14172294-14172459,14172993-14173054,14174781-14174859,
14174964-14175164,14175420-14175610
Length = 232
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 438 HHVQGPRQHVVGERRISPRAR 500
H+ GPR H+ G RR PRAR
Sbjct: 18 HYATGPRTHLPGPRR-KPRAR 37
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 270 VNPVLSHGGLLLDRYGEPPRLREA 341
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,706
Number of Sequences: 37544
Number of extensions: 306859
Number of successful extensions: 794
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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