Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_D13
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 79 3e-15
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 62 4e-10
Z81017-13|CAB02674.2| 526|Caenorhabditis elegans Hypothetical p... 29 3.6
Z68005-5|CAA91993.2| 526|Caenorhabditis elegans Hypothetical pr... 29 3.6
U39742-8|AAP68951.1| 392|Caenorhabditis elegans Drosophila disc... 29 3.6
U39742-7|AAK39197.2| 967|Caenorhabditis elegans Drosophila disc... 29 3.6
AJ295228-1|CAC35153.1| 967|Caenorhabditis elegans MAGUK protein... 29 3.6
AF406786-1|AAL01376.1| 967|Caenorhabditis elegans SAP97-like pr... 29 3.6
AF000261-10|AAB52930.1| 639|Caenorhabditis elegans Hypothetical... 27 8.4
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 78.6 bits (185), Expect = 3e-15
Identities = 50/129 (38%), Positives = 68/129 (52%)
Frame = +1
Query: 238 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 417
+ KQI E+ AS YL+M YF D V P AK F + + EEREHAT+L+ +RG
Sbjct: 16 VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRG-- 73
Query: 418 TGSVTNLITYRAPANTSWESGASALEHALKLESDVXNSIREVIXTCXSXFNDYHLVDYLS 597
G V L + P N W + A E AL LE S+ ++ T + ND HL D++
Sbjct: 74 -GRVV-LQDIQKPENDEWGTALKAFEAALALEKFNNESLLKLHSTAGN-HNDAHLTDFIE 130
Query: 598 GEFLDXQYK 624
++LD Q K
Sbjct: 131 EKYLDEQVK 139
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 61.7 bits (143), Expect = 4e-10
Identities = 42/127 (33%), Positives = 63/127 (49%)
Frame = +1
Query: 238 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 417
+ KQI E+ AS YL+M A+F D + AK F + + EER HAT+L+ +RG
Sbjct: 16 VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG-- 73
Query: 418 TGSVTNLITYRAPANTSWESGASALEHALKLESDVXNSIREVIXTCXSXFNDYHLVDYLS 597
G V + + P W + A E AL LE S+ ++ ND HL +Y+
Sbjct: 74 -GRVA-MQNIQKPEKDEWGTVLEAFEAALALERANNASLLKLHGIAEQR-NDAHLTNYIQ 130
Query: 598 GEFLDXQ 618
++L+ Q
Sbjct: 131 EKYLEEQ 137
>Z81017-13|CAB02674.2| 526|Caenorhabditis elegans Hypothetical
protein F59F3.4 protein.
Length = 526
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 217 KQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREH--ATKLI 390
KQ N + K+ ++ + + FS T R L+F TEE H ++K
Sbjct: 139 KQLTCNEILKENKQMTCKEVDAYCVSIRFSTKTKIRLKKKGLYFKHGTEEDVHYLSSKPH 198
Query: 391 DYLLMRGKLTGSVTNLITYRAPANTSW 471
+ ++R KL + L RAP T+W
Sbjct: 199 THHMIRLKLI-QIDRLNLGRAPCTTNW 224
>Z68005-5|CAA91993.2| 526|Caenorhabditis elegans Hypothetical
protein F59F3.4 protein.
Length = 526
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 217 KQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREH--ATKLI 390
KQ N + K+ ++ + + FS T R L+F TEE H ++K
Sbjct: 139 KQLTCNEILKENKQMTCKEVDAYCVSIRFSTKTKIRLKKKGLYFKHGTEEDVHYLSSKPH 198
Query: 391 DYLLMRGKLTGSVTNLITYRAPANTSW 471
+ ++R KL + L RAP T+W
Sbjct: 199 THHMIRLKLI-QIDRLNLGRAPCTTNW 224
>U39742-8|AAP68951.1| 392|Caenorhabditis elegans Drosophila discs
large homologprotein 1, isoform b protein.
Length = 392
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 552 GXDDLPDAVGDVTLQLEGVLEG*CAALPRRVGGGPVRDEVGYGACQLAPHEQVVNEL 382
G D P GD ++ + ++EG A R+ + V C+ HE VN L
Sbjct: 172 GGMDQPTEDGDTSIYVTNIIEGGAALADGRMRKNDIITAVNNTNCENVKHEVAVNAL 228
>U39742-7|AAK39197.2| 967|Caenorhabditis elegans Drosophila discs
large homologprotein 1, isoform a protein.
Length = 967
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 552 GXDDLPDAVGDVTLQLEGVLEG*CAALPRRVGGGPVRDEVGYGACQLAPHEQVVNEL 382
G D P GD ++ + ++EG A R+ + V C+ HE VN L
Sbjct: 218 GGMDQPTEDGDTSIYVTNIIEGGAALADGRMRKNDIITAVNNTNCENVKHEVAVNAL 274
>AJ295228-1|CAC35153.1| 967|Caenorhabditis elegans MAGUK protein
DLG-1 protein.
Length = 967
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 552 GXDDLPDAVGDVTLQLEGVLEG*CAALPRRVGGGPVRDEVGYGACQLAPHEQVVNEL 382
G D P GD ++ + ++EG A R+ + V C+ HE VN L
Sbjct: 218 GGMDQPTEDGDTSIYVTNIIEGGAALADGRMRKNDIITAVNNTNCENVKHEVAVNAL 274
>AF406786-1|AAL01376.1| 967|Caenorhabditis elegans SAP97-like
protein DLG-1 protein.
Length = 967
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 552 GXDDLPDAVGDVTLQLEGVLEG*CAALPRRVGGGPVRDEVGYGACQLAPHEQVVNEL 382
G D P GD ++ + ++EG A R+ + V C+ HE VN L
Sbjct: 218 GGMDQPTEDGDTSIYVTNIIEGGAALADGRMRKNDIITAVNNTNCENVKHEVAVNAL 274
>AF000261-10|AAB52930.1| 639|Caenorhabditis elegans Hypothetical
protein F19B10.10 protein.
Length = 639
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2
Query: 94 SYNHRFFDDIQKNMCS*KQ*LYKS 23
SYNHRFF I K++ S K+ LYK+
Sbjct: 99 SYNHRFF--IHKDISSDKKFLYKN 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,982,545
Number of Sequences: 27780
Number of extensions: 222676
Number of successful extensions: 499
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -