Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_D12
         (489 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p pro...   237   4e-63
AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC...   237   4e-63
Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal prot...   234   4e-62
U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal prot...   234   4e-62
AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p pro...   234   4e-62
AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB...   234   4e-62
AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA...   234   4e-62
X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal prot...   178   4e-45
BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p pro...    69   3e-12
AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA...    28   6.0  
AE014296-1525|AAF50362.1|  438|Drosophila melanogaster CG13307-P...    28   7.9  

>BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p
           protein.
          Length = 147

 Score =  237 bits (581), Expect = 4e-63
 Identities = 108/136 (79%), Positives = 119/136 (87%)
 Frame = +1

Query: 61  YKLAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 240
           +K+ I P YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 241 YGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLS 420
           YGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS
Sbjct: 72  YGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLS 131

Query: 421 IRVTNAAARLRSQENE 468
           +R+TN   RLRSQENE
Sbjct: 132 VRLTNPNGRLRSQENE 147


>AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC,
           isoform C protein.
          Length = 147

 Score =  237 bits (581), Expect = 4e-63
 Identities = 108/136 (79%), Positives = 119/136 (87%)
 Frame = +1

Query: 61  YKLAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 240
           +K+ I P YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 241 YGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLS 420
           YGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS
Sbjct: 72  YGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLS 131

Query: 421 IRVTNAAARLRSQENE 468
           +R+TN   RLRSQENE
Sbjct: 132 VRLTNPNGRLRSQENE 147


>Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  234 bits (573), Expect = 4e-62
 Identities = 107/134 (79%), Positives = 117/134 (87%)
 Frame = +1

Query: 67  LAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 246
           + I P YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 247 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 426
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 427 VTNAAARLRSQENE 468
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  234 bits (573), Expect = 4e-62
 Identities = 107/134 (79%), Positives = 117/134 (87%)
 Frame = +1

Query: 67  LAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 246
           + I P YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 247 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 426
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 427 VTNAAARLRSQENE 468
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p
           protein.
          Length = 134

 Score =  234 bits (573), Expect = 4e-62
 Identities = 107/134 (79%), Positives = 117/134 (87%)
 Frame = +1

Query: 67  LAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 246
           + I P YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 247 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 426
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 427 VTNAAARLRSQENE 468
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB,
           isoform B protein.
          Length = 134

 Score =  234 bits (573), Expect = 4e-62
 Identities = 107/134 (79%), Positives = 117/134 (87%)
 Frame = +1

Query: 67  LAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 246
           + I P YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 247 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 426
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 427 VTNAAARLRSQENE 468
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA,
           isoform A protein.
          Length = 134

 Score =  234 bits (573), Expect = 4e-62
 Identities = 107/134 (79%), Positives = 117/134 (87%)
 Frame = +1

Query: 67  LAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 246
           + I P YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 247 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 426
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 427 VTNAAARLRSQENE 468
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134


>X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 133

 Score =  178 bits (433), Expect = 4e-45
 Identities = 83/120 (69%), Positives = 96/120 (80%)
 Frame = +1

Query: 67  LAIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 246
           + I P YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRV RRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKDFIRHQSDRYAKLSHKWRKPKGIDNRVGRRFKGQYLMPNIGYG 60

Query: 247 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 426
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQN +   E+    S  + K I+ERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNPRLLREMP-TASPPRSKEIIERAKQLSLR 119


>BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p
           protein.
          Length = 126

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 40/98 (40%), Positives = 54/98 (55%)
 Frame = +3

Query: 183 Y*QQSPQAIQGSILDAQHRLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDR 362
           Y QQS   +QG++ DAQHRLR +Q  P +A   I   P +Q  RAG    A+  +LRRDR
Sbjct: 7   YRQQSASPLQGTVSDAQHRLRIEQAHPPHAAHRIQEVPGAQRARAGGPAHAEPRLLRRDR 66

Query: 363 SRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGERINI 476
            R L +EA+ D     AA     +  RSP    ER+++
Sbjct: 67  PRRLLQEAQGDCRARQAAVGPPHQPQRSPAFSRERVSL 104


>AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA
           protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 321 NLDDAKQEVLRRDRSRCL-FEEAEADRGKSPAAQHQS 428
           NL  ++   LRR RSRCL +      R  SP+ +H S
Sbjct: 132 NLSRSRSRTLRRSRSRCLGWSCWSLRRSPSPSRRHHS 168


>AE014296-1525|AAF50362.1|  438|Drosophila melanogaster CG13307-PA
           protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 188 TTESAGDSRVNT*CPTSVTVPTRRPVICSQMDS 286
           TTES+ DS V T  PT+VT P     +C+Q ++
Sbjct: 386 TTESSTDSTVTTETPTTVT-PLTPAQMCAQRNA 417


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,931,372
Number of Sequences: 53049
Number of extensions: 431292
Number of successful extensions: 1291
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)