Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_D06
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    27   1.1  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    26   2.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   4.3  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.4  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    24   9.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    24   9.8  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 198 RSQMSNTCGKYKNTE*EELVAWSRELFPCSGNAVL 302
           +S  +N CG+ + T+ + L+      F C+GN +L
Sbjct: 109 KSGKTNLCGRIRTTQGKGLMPDGTSRFSCNGNTLL 143


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 322 VEGWVVAQVLGEGAYGEVRLL 384
           +E +   +V+G+GA+GEVRL+
Sbjct: 90  LEDFSTIKVIGKGAFGEVRLV 110


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 321 ELGHWLGAPRCRNKETVLSTTPPTLLIRYFCIFHTCYSSVIDESNLA 181
           ++  WL +  CR  +   S+ PP+  I      H+C SS  +E +L+
Sbjct: 346 KIADWLRS--CRLTKPESSSVPPSSSISRSSTIHSCTSSKRNEDSLS 390


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 303 GAPRC-RNKETVLSTTPPTLLIRYFCIFHTCYSSV 202
           G P C R+KE +       L + + CIF   Y+S+
Sbjct: 237 GIPVCIRSKEKMFLNPDCALTLSFICIFLAQYTSI 271


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +2

Query: 197 SITDE*HVWKIQKYRMRRVGGVVER 271
           ++ D+ ++W+++K R+R   G++ R
Sbjct: 372 TLVDQIYLWELEKNRLRATPGILFR 396


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 286 PATRCSQPMTEFVEGWVVAQVLGEGAYGEV 375
           P++  S P  + V  +   ++LGEG+Y  V
Sbjct: 84  PSSGASTPNIKRVSDFKFGEILGEGSYSTV 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,748
Number of Sequences: 5004
Number of extensions: 29351
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)