Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_D06
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0440 + 29401405-29401407,29401721-29401920,29402406-294024...    38   0.005
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551...    32   0.20 
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790...    27   5.6  
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878     27   9.7  
05_06_0226 + 26561673-26562908                                         27   9.7  
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575...    27   9.7  

>01_06_0440 +
           29401405-29401407,29401721-29401920,29402406-29402490,
           29403038-29403121,29403853-29404147,29404228-29404322,
           29406118-29406858
          Length = 500

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = -3

Query: 333 PAFDELG--HWLGAPRCRNKETVLSTTPPTLLIRYFCIFHTCYSSVIDESNLAIFF*EPL 160
           P FDE+   HWL  PR    ++ L  +P T  +  FC F+T  SSV++ +N A    +  
Sbjct: 366 PDFDEMDVEHWL-LPREDVVDSYLVESPETHEVTDFCSFYTLPSSVLNNANYATL--KAA 422

Query: 159 TSNATLGTAIKRVQLFYDRLILKLME*YE 73
            S   + T     QL  D LI+   + Y+
Sbjct: 423 YSYYNVSTKTPLQQLMNDALIVAKQKNYD 451


>12_02_1088 -
           25954506-25954652,25954769-25954918,25955011-25955116,
           25955247-25955569,25955656-25955790,25956310-25956444,
           25956445-25956525,25956619-25956807,25956935-25957127,
           25957244-25957350,25957457-25957531,25957619-25957774,
           25957968-25958051,25958152-25958265,25958345-25958440,
           25958543-25958633,25958721-25958836,25958934-25959093,
           25960390-25960634
          Length = 900

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 390 VHQQPNLSIGAFTKHLRDNPAFDELGHWLGAPRCRNKETVLSTTPPTLLIRY 235
           V+  PN  +G+   H+  NP F  +G   G   C     +L   PP LL+R+
Sbjct: 444 VNSSPNKLVGS---HVSPNPLFSTVG---GGILCAKASMLLQNVPPALLVRF 489


>07_01_0935 +
           7905748-7905765,7906071-7906096,7906142-7906166,
           7906891-7907700,7907803-7907934,7908102-7908470,
           7908540-7908671,7909135-7909662
          Length = 679

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +1

Query: 250 SWWRGRENCFLVPATRCS-QPMTEFVEGWVVAQVLGEGAYGEVRLLVH 390
           SWW    NC LV   RC   P T    G  ++         E+ LL H
Sbjct: 503 SWWSSYGNC-LVLDKRCGVPPTTSTFSGQAISHTAASIGVREIILLAH 549


>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
          Length = 947

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 358 LHQAPARQPSLRRT-RSLVGSTALPE 284
           LH +PA +PS+R+  + L GS  LPE
Sbjct: 618 LHPSPAARPSMRQVMQYLDGSAPLPE 643


>05_06_0226 + 26561673-26562908
          Length = 411

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 250 SWWRGRENCFLVPATRCSQPMTEFVEGWVVAQVLGEGAYGEVRLLVH 390
           S WR     FL  A R ++    +   W+   V G+G  GE  +LV+
Sbjct: 81  SGWRRTHPFFLPHAARRARCFGSYDGAWLFLAVDGQGPRGEDHVLVN 127


>03_05_0451 -
           24456923-24457069,24457161-24457310,24457408-24457513,
           24457715-24458040,24458129-24458263,24458350-24458430,
           24458516-24458704,24458794-24458986,24459068-24459174,
           24459280-24459354,24459446-24459601,24459745-24459828,
           24459933-24460046,24460119-24460214,24460302-24460392,
           24460500-24460615,24460878-24461037,24461964-24462217
          Length = 859

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 387 HQQPNLSIGAFTKHLRDNPAFDELGHWLGAPRCRNKETVLSTTPPTLLIRY 235
           +  PN  +G+   H+  +  F  +G   G   C     +L   PP LL+R+
Sbjct: 448 NSSPNKLVGS---HVNSSQLFSAIG---GGILCAKASMLLQNVPPALLVRF 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,592
Number of Sequences: 37544
Number of extensions: 193561
Number of successful extensions: 538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)