Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_D06
(461 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U44902-1|AAA93318.1| 483|Caenorhabditis elegans serine/threonin... 29 2.1
AC024770-6|AAF59485.2| 503|Caenorhabditis elegans Checkpoint ki... 29 2.1
U41263-3|AAC24425.1| 361|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical pr... 27 4.9
AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-li... 27 4.9
Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z68333-1|CAA92725.1| 405|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z49132-8|CAA88987.1| 366|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41011-9|AAA82292.1| 359|Caenorhabditis elegans Hypothetical pr... 27 8.6
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 27 8.6
>U44902-1|AAA93318.1| 483|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 483
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 337 VAQVLGEGAYGEVRLLVH 390
V Q LGEGA+GEV L+V+
Sbjct: 26 VVQTLGEGAFGEVLLIVN 43
>AC024770-6|AAF59485.2| 503|Caenorhabditis elegans Checkpoint
kinase protein 1, isoforma protein.
Length = 503
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 337 VAQVLGEGAYGEVRLLVH 390
V Q LGEGA+GEV L+V+
Sbjct: 26 VVQTLGEGAFGEVLLIVN 43
>U41263-3|AAC24425.1| 361|Caenorhabditis elegans Hypothetical
protein T19D12.5 protein.
Length = 361
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 307 PMTE-FVEGWVVAQVLGEGAYGEVRL 381
P+ E F++ W++ ++G+G YGE+ L
Sbjct: 53 PLNEKFMKRWLIEGLIGKGGYGEIYL 78
>Z83114-5|CAB05550.2| 485|Caenorhabditis elegans Hypothetical
protein K09B11.1 protein.
Length = 485
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 283 VPATRCSQPMTEFVEGWVVAQVLGEGAYGEV 375
+P T C + E G+ V+ V+G+G YG V
Sbjct: 171 LPVTYCE--LLEATNGFAVSNVIGKGGYGTV 199
>AF348167-1|AAK37545.1| 485|Caenorhabditis elegans Pelle IRAK-like
kinase 1 protein.
Length = 485
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 283 VPATRCSQPMTEFVEGWVVAQVLGEGAYGEV 375
+P T C + E G+ V+ V+G+G YG V
Sbjct: 171 LPVTYCE--LLEATNGFAVSNVIGKGGYGTV 199
>Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical
protein Y48E1B.3 protein.
Length = 360
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 222 HTCYSSVIDESNLAIFF*EPLTSNATLGTAIKRV 121
H+C +S DE+NLA + L S A LG +K+V
Sbjct: 104 HSCENSGYDEANLAQTY-SALLSLAILGDDLKKV 136
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
protein F39B2.4b protein.
Length = 1589
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -3
Query: 207 SVIDESNLAIFF*EPLTSNATLGTAIKRVQLFYDRLILKLME 82
S+++E++ FF PLTSN TAI R+Q ++ ++ K+ E
Sbjct: 35 SLVEENHTRKFF-RPLTSNIGDETAILRIQ--FNNMMSKMEE 73
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
protein F39B2.4a protein.
Length = 1587
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -3
Query: 207 SVIDESNLAIFF*EPLTSNATLGTAIKRVQLFYDRLILKLME 82
S+++E++ FF PLTSN TAI R+Q ++ ++ K+ E
Sbjct: 35 SLVEENHTRKFF-RPLTSNIGDETAILRIQ--FNNMMSKMEE 73
>Z68333-1|CAA92725.1| 405|Caenorhabditis elegans Hypothetical
protein C05C12.1 protein.
Length = 405
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 322 VEGWVVAQVLGEGAYGEV 375
++G+ V + +GEGAYG+V
Sbjct: 22 IKGYQVVESIGEGAYGQV 39
>Z49132-8|CAA88987.1| 366|Caenorhabditis elegans Hypothetical
protein ZK666.8 protein.
Length = 366
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 286 PATRCSQPMTE-FVEGWVVAQVLGEGAYGEVRLLV 387
P + P+ E F + W + ++G+G YGE+ L +
Sbjct: 52 PTSTPLMPIDEKFRKRWHIEGIIGKGGYGEIYLAI 86
>U41011-9|AAA82292.1| 359|Caenorhabditis elegans Hypothetical
protein D2024.1 protein.
Length = 359
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 310 MTEFVEGWVVAQVLGEGAYGEV 375
M + ++G+ V + +G+GAYG+V
Sbjct: 18 MDDKIKGYQVVESIGDGAYGQV 39
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -3
Query: 207 SVIDESNLAIFF*EPLTSNATLGTAIKRVQLFYDRLILKLME 82
S+++E++ FF PLTSN TAI R+Q ++ ++ K+ E
Sbjct: 35 SLVEENHTRKFF-RPLTSNIGDETAILRIQ--FNNMMSKMEE 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,740,639
Number of Sequences: 27780
Number of extensions: 169831
Number of successful extensions: 537
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -