Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_D05
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 37 0.012
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 37 0.016
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 36 0.037
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 35 0.049
01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331... 33 0.20
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 31 0.60
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949... 31 0.60
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042... 30 1.8
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 29 3.2
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 28 5.6
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 28 5.6
01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207... 28 7.4
02_05_0341 - 28115835-28116404 27 9.8
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +2
Query: 491 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 643
LR++ L D+ L LW L+ +G+C N +TL+ + ++ L T+P YE
Sbjct: 187 LRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVPILYE 237
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 491 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 643
LR + DL L V LW L+ +G+C N +TL + ++ L+T+P YE
Sbjct: 159 LREIGQGHDLKKFLIVVVGLWVLSVLGSCCNFLTLFYIVFMVLYTVPVLYE 209
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 494 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 643
R + L DL L V LW L+ VG+C + +TLI + + L T+P Y+
Sbjct: 174 REIALGHDLKKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTVPILYD 223
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 35.1 bits (77), Expect = 0.049
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 542 VLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMN 649
+LLW L+ +G + ITL G IAL T+P Y N
Sbjct: 156 LLLWLLSVIGNFCSSITLAYFGTIALVTIPALYSKN 191
>01_06_0631 +
30732091-30732292,30732690-30732870,30732994-30733135,
30733228-30733297,30733383-30733549
Length = 253
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 548 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 643
LW L+ +G+ N +TL + ++AL+T+P YE
Sbjct: 180 LWILSVLGSSCNFLTLFYIVFVALYTVPVLYE 211
>03_06_0184 -
32188778-32188947,32189104-32189173,32189332-32189473,
32189559-32189739,32189857-32190051,32190782-32190795,
32190815-32190864,32191493-32191519
Length = 282
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 548 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 643
LW +G N +T+I +G+++ TLP YE
Sbjct: 208 LWAAAVIGGWCNFLTVIYIGFVSAHTLPVLYE 239
>02_02_0367 +
9496893-9497022,9498262-9498442,9498519-9498660,
9498757-9498826,9498920-9499089
Length = 230
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 491 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 640
LR + L DL+ L V LW L+ +G+ + +TL + + L T+P Y
Sbjct: 137 LREISLGHDLMKFLGVIVALWILSEIGSLCDFLTLFYVAVLMLHTVPILY 186
>05_07_0022 -
27103367-27103533,27103783-27103852,27104074-27104215,
27104372-27104552,27104654-27104756
Length = 220
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 548 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 643
LW L +G + TL+ +G++ TLP YE
Sbjct: 147 LWILAVIGETCSFTTLLYVGFLCALTLPALYE 178
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 536 FGVLLWCLTYVGACFNGITLIILGW 610
FG+ WC+ Y G NG T+ W
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLW 316
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 530 LKFGVLLWCLTYVGACFNGITLIIL 604
+K ++LW ++Y+G FN +TLI +
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLIYI 148
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 508 GGGPGGLAEVRRAAVVPHVRGGVLQRDHAHHPRLDS 615
GG GG A+ R + HV G V Q HHP+L S
Sbjct: 292 GGSAGGGADGSRYWLAIHVVGVVRQTFTNHHPKLCS 327
>01_01_0255 +
2079112-2079196,2079334-2079514,2079712-2079853,
2079934-2080003,2080140-2080303
Length = 213
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 548 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 643
L+ + + +CF+ +TL+ L + TLP YE
Sbjct: 141 LFIASVIASCFSSLTLLYLVVLGTMTLPVMYE 172
>02_05_0341 - 28115835-28116404
Length = 189
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 49 RCPHRRHSVM*HCVLTVIETHNSSLNCNLIVYLFENKHGIR*RRC 183
+C HR H+ C+ T + H+S +C ++ E G R RC
Sbjct: 118 QCDHRFHAA---CIDTWLRAHSSCPSCRRVLVAAEMPPGERCGRC 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,764
Number of Sequences: 37544
Number of extensions: 160990
Number of successful extensions: 699
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -