Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_D03
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 188 7e-49
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 131 6e-32
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 127 1e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 121 7e-29
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 112 3e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 111 7e-26
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 107 9e-25
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 103 1e-23
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 99 6e-22
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 96 4e-21
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 89 4e-19
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 88 8e-19
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 87 2e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 85 6e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 82 5e-17
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 77 2e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 77 3e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 76 4e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 71 1e-13
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 71 2e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 67 2e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 66 5e-12
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 64 2e-11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 64 2e-11
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 58 7e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 56 4e-09
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 55 7e-09
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 54 2e-08
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 41 1e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 40 4e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 37 0.003
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.7
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 27 2.7
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 3.6
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 26 3.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 188 bits (457), Expect = 7e-49
Identities = 84/167 (50%), Positives = 123/167 (73%)
Frame = +2
Query: 35 ANNNIKQIIXLCEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGGYKA 214
A++NIKQI+ + + +K +L ++E+ +++NKV++F TK+ DDI R +R+ G+ A
Sbjct: 337 ASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPA 396
Query: 215 LAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHR 394
LAIHGDK+Q ERD VL EFR G + I++ATDVA+RG+DV+ + V N+D+P ++EDY+HR
Sbjct: 397 LAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHR 456
Query: 395 IGRTGRCQQSGTAYTYFTSGDCRQARGLLAVLRETGQNPPTKLADMA 535
IGRTGR GTAYTYFTS + +QAR L+++L E Q+ KL +MA
Sbjct: 457 IGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 131 bits (317), Expect = 6e-32
Identities = 71/166 (42%), Positives = 102/166 (61%), Gaps = 3/166 (1%)
Frame = +2
Query: 35 ANNNIKQIIXLCEE-HEKEVKLTNLLKEIASE--KENKVIVFVETKKKVDDIARAVRRGG 205
A+ NI QI+ + ++ KE L NLL++ S K++K+++FV KK+ + + R
Sbjct: 382 ASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK- 440
Query: 206 YKALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDY 385
Y + IHGD SQ R L +F++G +L+ATDVAARGLD+ V+ V+N +P + EDY
Sbjct: 441 YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDY 500
Query: 386 IHRIGRTGRCQQSGTAYTYFTSGDCRQARGLLAVLRETGQNPPTKL 523
+HRIGRTGR GTA T+FT D A L+ VLR+ Q+ P L
Sbjct: 501 VHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGL 546
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 127 bits (307), Expect = 1e-30
Identities = 64/166 (38%), Positives = 99/166 (59%)
Frame = +2
Query: 38 NNNIKQIIXLCEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGGYKAL 217
+ NI Q + E+ EK L ++L + E ++FVETK+ D + + + A
Sbjct: 401 SENITQKVVHVEDSEKRSYLLDILHTLPPE--GLTLIFVETKRMADTLTDYLLNSNFPAT 458
Query: 218 AIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRI 397
+IHGD++Q ER+ L FR+G T+I++AT VA+RGLD+ +V V+N+D P +DY+HRI
Sbjct: 459 SIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRI 518
Query: 398 GRTGRCQQSGTAYTYFTSGDCRQARGLLAVLRETGQNPPTKLADMA 535
GRTGR +G A +F + A+ L+ +L+E Q P+ L MA
Sbjct: 519 GRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 121 bits (292), Expect = 7e-29
Identities = 59/166 (35%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Frame = +2
Query: 41 NNIKQIIXLCEEHEKEVKLTNLLKEIASEK-ENKVIVFVETKKKVDDIARAVRRGGYKAL 217
+ ++QI+ + E K +L LL E+ + + + + +VFV+ ++ D + + + GY +
Sbjct: 637 SEVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSN 696
Query: 218 AIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRI 397
+IHG K Q +RD+ +++++ G +LIAT V ARGLDV+ ++ VVN+D PN EDY+HR+
Sbjct: 697 SIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRV 756
Query: 398 GRTGRCQQSGTAYTYFTSGDCRQARGLLAVLRETGQNPPTKLADMA 535
GRTGR +G A T+ T + A + L+ + Q P +L +A
Sbjct: 757 GRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLA 802
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 112 bits (270), Expect = 3e-26
Identities = 58/167 (34%), Positives = 90/167 (53%)
Frame = +2
Query: 32 LANNNIKQIIXLCEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGGYK 211
L IKQ E+ +E KL L + + ++F T++KVD + + +
Sbjct: 227 LTLEGIKQFYVAVEK--EEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFT 284
Query: 212 ALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIH 391
++HGD Q +RD ++ EFR GS+ ILI TD+ ARG+DV+ V V+N+D P + E+YIH
Sbjct: 285 VSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
Query: 392 RIGRTGRCQQSGTAYTYFTSGDCRQARGLLAVLRETGQNPPTKLADM 532
RIGR GR + G + + T+ D R R + + P +AD+
Sbjct: 345 RIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADL 391
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 111 bits (267), Expect = 7e-26
Identities = 48/132 (36%), Positives = 79/132 (59%)
Frame = +2
Query: 137 KVIVFVETKKKVDDIARAVRRGGYKALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAA 316
+ ++F +++KVD + +R + ++HG+ Q ERDA++ +FR G++ +LI TD+ A
Sbjct: 262 QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWA 321
Query: 317 RGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYTYFTSGDCRQARGLLAVLRE 496
RG+DV+ V V+N+D P + E+YIHRIGR+GR + G A + T+ D R R +
Sbjct: 322 RGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYST 381
Query: 497 TGQNPPTKLADM 532
P + DM
Sbjct: 382 VIDEMPMNIGDM 393
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 107 bits (258), Expect = 9e-25
Identities = 50/141 (35%), Positives = 86/141 (60%)
Frame = +2
Query: 35 ANNNIKQIIXLCEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGGYKA 214
A + ++Q + + + K+ + + E ++ +I+FV K+ ++ IA+ + G+ A
Sbjct: 485 AVDRVEQRVEMISDDSKKWRRVEEILE-SNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHA 543
Query: 215 LAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHR 394
+ +HG KSQ +R+ + + RN + IL+ATD+A RG+D+ +V V+N++ S EDY HR
Sbjct: 544 VTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHR 603
Query: 395 IGRTGRCQQSGTAYTYFTSGD 457
IGRTGR +SGTA T+ D
Sbjct: 604 IGRTGRAGKSGTAITFLGPED 624
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 103 bits (248), Expect = 1e-23
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Frame = +2
Query: 104 LLKEIASEKENK--VIVFVETKKKVDDIARAVRRGGYKALAIHGDKSQPERDAVLTEFRN 277
+L+++ S E K V++FV+ ++ + + IHG+ Q +R+ L +FR
Sbjct: 277 ILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRK 336
Query: 278 GSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYTYFTSGD 457
G +LIATD+ ARG+D VK V+NFD+P S YIHRIGRTGR +G A T+FT D
Sbjct: 337 GEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKED 396
Query: 458 CRQARGLLAVLRETGQNPP 514
+ + V+R +G P
Sbjct: 397 GEYIKLIAGVMRSSGCEVP 415
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 98.7 bits (235), Expect = 6e-22
Identities = 49/125 (39%), Positives = 73/125 (58%)
Frame = +2
Query: 83 KEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGGYKALAIHGDKSQPERDAVL 262
K+ L L+ E+A N +I+F T +A +R G+ A+ +HG SQ R L
Sbjct: 272 KDTYLVYLVNELAG---NSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGAL 328
Query: 263 TEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYTY 442
+F++G+ + L+ATDVAARGLD+ V V+N+D P S+ YIHR+GRT R ++G +
Sbjct: 329 NKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIAL 388
Query: 443 FTSGD 457
T D
Sbjct: 389 VTQYD 393
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 95.9 bits (228), Expect = 4e-21
Identities = 49/147 (33%), Positives = 83/147 (56%)
Frame = +2
Query: 26 TCLANNNIKQIIXLCEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGG 205
T L + ++Q EE K K+ +LL + + N+V++FV++ + +++ R +R
Sbjct: 263 TKLTLHGLQQHYVKLEEKAKNRKINDLLDSL---EFNQVVIFVKSVSRANELDRLLRECN 319
Query: 206 YKALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDY 385
+ ++ IHG Q ER F++ I +ATDV RG+D+E V V+N+D P+S + Y
Sbjct: 320 FPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSY 379
Query: 386 IHRIGRTGRCQQSGTAYTYFTSGDCRQ 466
+HR+GR GR G A T+ +S + Q
Sbjct: 380 LHRVGRAGRFGTKGLAITFSSSEEDSQ 406
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 89.0 bits (211), Expect = 4e-19
Identities = 48/139 (34%), Positives = 72/139 (51%)
Frame = +2
Query: 41 NNIKQIIXLCEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGGYKALA 220
+ ++Q +E L +LL I + I+FV + + I +R +
Sbjct: 229 STLQQSYIFVSSQVREAYLVHLLT-IPENAKKSAIIFVNRTRTAELIYSILRLLELRVTE 287
Query: 221 IHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIG 400
+H + Q ER L FR + IL+ATDVA+RGLD+ V+ V+NFD P +DYIHR+G
Sbjct: 288 LHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVG 347
Query: 401 RTGRCQQSGTAYTYFTSGD 457
RT R +SG + + T D
Sbjct: 348 RTARAGRSGESISIVTERD 366
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 88.2 bits (209), Expect = 8e-19
Identities = 44/142 (30%), Positives = 74/142 (52%)
Frame = +2
Query: 32 LANNNIKQIIXLCEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGGYK 211
L + Q +E +K L L ++ + N+ I+F + +V+ +A+ + GY
Sbjct: 251 LTLRGVTQYYAFVDESQKVHCLNTLFSKL---QINQSIIFCNSTNRVELLAKKITELGYS 307
Query: 212 ALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIH 391
H Q R+ V FRNG L+ +D+ RG+D++ V V+NFD+P ++E Y+H
Sbjct: 308 CFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
Query: 392 RIGRTGRCQQSGTAYTYFTSGD 457
RIGR+GR G A ++ + D
Sbjct: 368 RIGRSGRFGHRGLAISFISWAD 389
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 87.0 bits (206), Expect = 2e-18
Identities = 41/117 (35%), Positives = 67/117 (57%)
Frame = +2
Query: 107 LKEIASEKENKVIVFVETKKKVDDIARAVRRGGYKALAIHGDKSQPERDAVLTEFRNGST 286
LK S + +VFV TK V+ ++ + + GY I+G Q R + FR G T
Sbjct: 338 LKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKT 397
Query: 287 TILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYTYFTSGD 457
+L+ TDVA+RG+D+ + V+N+D+P + ++HR+GRT R ++G AY+ + D
Sbjct: 398 NLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAED 454
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 85.4 bits (202), Expect = 6e-18
Identities = 38/89 (42%), Positives = 58/89 (65%)
Frame = +2
Query: 212 ALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIH 391
A IHG SQ +R L +FR+G L+ATDVA+RG+D++ ++ V+N++ P + E Y+H
Sbjct: 531 ATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLH 590
Query: 392 RIGRTGRCQQSGTAYTYFTSGDCRQARGL 478
R+GRT R +SG A T GD + +G+
Sbjct: 591 RVGRTARAGRSGRAITLAGEGDRKVLKGV 619
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 82.2 bits (194), Expect = 5e-17
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 6/143 (4%)
Frame = +2
Query: 32 LANNNIKQIIXLCEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGGYK 211
L+ IKQ+ C+ E + + L + + ++ I+F + K ++IAR + G+
Sbjct: 321 LSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQS--IIFCKKKDTAEEIARRMTADGHT 378
Query: 212 ALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYP------NS 373
+ G+ +RDA++ FR G++ +L+ T+V ARG+DV V VVN+D P
Sbjct: 379 VACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPD 438
Query: 374 SEDYIHRIGRTGRCQQSGTAYTY 442
+ Y+HRIGRTGR + G + +
Sbjct: 439 PQTYLHRIGRTGRFGRVGVSINF 461
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 77.0 bits (181), Expect = 2e-15
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Frame = +2
Query: 92 KLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRR--GGYKALAIHGDKSQPERDAVLT 265
KL L I + + K IVF+ + K+V + RR G L +HG + Q R V
Sbjct: 270 KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTA 329
Query: 266 EFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTA 433
+F + +L TD+ ARGLD V +V+ D P + YIHR+GRT R +SG A
Sbjct: 330 KFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNA 385
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 76.6 bits (180), Expect = 3e-15
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Frame = +2
Query: 101 NLLKEIASEK-ENKVIVFVETKKKVDDIARAVRRG-GYKALAIHGDKSQPERDAVLTEFR 274
+LL+++ S +++IVF+ T VD + + +H + +R ++ FR
Sbjct: 281 SLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFR 340
Query: 275 NGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAY 436
+ IL ATDV ARG+D ++ VV P++++DYIHRIGRTGR ++G AY
Sbjct: 341 KCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAY 394
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 75.8 bits (178), Expect = 4e-15
Identities = 38/94 (40%), Positives = 53/94 (56%)
Frame = +2
Query: 131 ENKVIVFVETKKKVDDIARAVRRGGYKALAIHGDKSQPERDAVLTEFRNGSTTILIATDV 310
+ KVIVF+ + V +A + L +HG + Q R EF N IL+ T+V
Sbjct: 336 KKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNV 395
Query: 311 AARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGR 412
AARGLD+ V ++V +D P+ DYIHR+GRT R
Sbjct: 396 AARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR 429
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 70.9 bits (166), Expect = 1e-13
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Frame = +2
Query: 119 ASEKENKVIVFVETKKKVDDIARAVRRGGYKAL-AIHGDKSQPERDAVLTEFRNGSTT-- 289
A E E V +++ + A A+R G + +HG SQ R + L F + +
Sbjct: 438 ADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGS 497
Query: 290 -ILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYTY 442
IL+ TDVAARGLD+ +V VV +D P S++DY+HRIGRT R +G A +
Sbjct: 498 HILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMF 549
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 70.5 bits (165), Expect = 2e-13
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = +2
Query: 236 SQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRC 415
S+ ER +++ F G +L+ +D+ ARG+DV + + V+N+D P S Y+HRIGRT R
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA 531
Query: 416 QQSGTAYTYFTSGDCRQARGLLAVLRET 499
+ G A+T S + L+ LR T
Sbjct: 532 GREGFAWTLVQSHEGHHFSKLVKQLRRT 559
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 67.3 bits (157), Expect = 2e-12
Identities = 38/138 (27%), Positives = 70/138 (50%)
Frame = +2
Query: 20 P*TCLANNNIKQIIXLCEEHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRR 199
P + +A+ ++ +I C EK++ L L+ K +VF + + I +
Sbjct: 357 PQSAVASRVLEGLIE-CAPAEKDLYLYYLIMRYPG----KTMVFANGIEDIKRITPFLNE 411
Query: 200 GGYKALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSE 379
+ +H Q +R L +F+N +L+ TDVAARG+D+ V V+++ P++++
Sbjct: 412 LKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTAD 471
Query: 380 DYIHRIGRTGRCQQSGTA 433
Y+HR GRT R + G +
Sbjct: 472 MYVHRSGRTARANEDGVS 489
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 65.7 bits (153), Expect = 5e-12
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +2
Query: 206 YKALAIHGDKSQPERDAVLTEFRNGST-TILIATDVAARGLDVEDVKFVVNFDYPNSSED 382
++ +A+HG + Q R +F+ + T+L TD+A+RGLD+ +V FV+ D P +
Sbjct: 283 FEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKS 342
Query: 383 YIHRIGRTGRCQQSGTAYTYFTSGDCRQARGLLAV 487
+ HR GR GR ++G A G + LL V
Sbjct: 343 FSHRCGRAGRAGRAGVAIVLLNDGREEEYEELLRV 377
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 63.7 bits (148), Expect = 2e-11
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Frame = +2
Query: 26 TCLANNNIKQIIXLCEEHEKEVKLTNLLKEI-ASEKENKVIVFVETKKKVDDIARAVRRG 202
T A NI + + E + L L+K E + + I+F TKK V+ I R + +
Sbjct: 1379 TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQS 1438
Query: 203 GYKA---LAIH-GDKSQPERDAVLTEFRN--GSTTILIATDVAARGLDVEDVKFVVNFDY 364
A + I+ GD S ER FRN G T I+IAT G++ V+ VV++
Sbjct: 1439 DLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGL 1498
Query: 365 PNSSEDYIHRIGRTGRCQQSGTAYTYFTSGD 457
P SS DY+ GR GR + A ++ D
Sbjct: 1499 PASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 63.7 bits (148), Expect = 2e-11
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Frame = +2
Query: 26 TCLANNNIKQIIXLCEEHEKEVKLTNLLKEI-ASEKENKVIVFVETKKKVDDIARAVRRG 202
T A NI + + E + L L+K E + + I+F TKK V+ I R + +
Sbjct: 1379 TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQS 1438
Query: 203 GYKA---LAIH-GDKSQPERDAVLTEFRN--GSTTILIATDVAARGLDVEDVKFVVNFDY 364
A + I+ GD S ER FRN G T I+IAT G++ V+ VV++
Sbjct: 1439 DLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGL 1498
Query: 365 PNSSEDYIHRIGRTGRCQQSGTAYTYFTSGD 457
P SS DY+ GR GR + A ++ D
Sbjct: 1499 PASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 58.4 bits (135), Expect = 7e-10
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +2
Query: 143 IVFVETKKKVDDIARAVRRG-GYKALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAAR 319
I++ ++ + +A +R G KA H + ER + E+++GS I++AT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 320 GLDVEDVKFVVNFDYPNSSEDYIHRIGRTGR 412
G+D DV+FV++ +P S E Y GR GR
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQETGRAGR 836
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 56.0 bits (129), Expect = 4e-09
Identities = 24/43 (55%), Positives = 33/43 (76%)
Frame = +2
Query: 314 ARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYTY 442
ARGLD E+V V+NFD P++++ YIHRIGRT R + GTA ++
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSF 429
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 55.2 bits (127), Expect = 7e-09
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 2/149 (1%)
Frame = +2
Query: 32 LANNNIKQIIXLCEEHEKEVK--LTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRGG 205
L + + ++ L +EH K+ N I +E N T + + RA G
Sbjct: 446 LNHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMVRASLFIG 505
Query: 206 YKALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDY 385
A +Q ++ + +FR G L+AT + GLD+ D ++ +D +S
Sbjct: 506 QANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRT 565
Query: 386 IHRIGRTGRCQQSGTAYTYFTSGDCRQAR 472
I R+GRTGR ++SG + T DC ++
Sbjct: 566 IQRMGRTGR-KKSGKVFVLLTE-DCEDSK 592
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 53.6 bits (123), Expect = 2e-08
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Frame = +2
Query: 74 EHEKEVKLTNLLKEIASEKENKVIVFVETKKKVDDIARAVRRG----------GYKALAI 223
EH + + KE K+ ++++FVE + ++I R + + G A+
Sbjct: 415 EHLERIVTEYFEKE--QTKDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRK 472
Query: 224 HGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGR 403
SQ ++ + +F+ G LIAT + GLD+ +V ++ +D S + R+GR
Sbjct: 473 AAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGR 532
Query: 404 TGRCQQSGTAYTYFTSG 454
TGR ++ G Y T G
Sbjct: 533 TGR-KRKGYIYMLLTRG 548
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 41.1 bits (92), Expect = 1e-04
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Frame = +2
Query: 122 SEKENKVIVFVETKKKVDDIARAVR-------RGGY--KALAIHGDKSQPERDAVLTEFR 274
+EK + IVF +K + + R VR +G K + + ER + +E
Sbjct: 548 AEKRVRTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKIQSYRAGYTVQERRKIESEMF 607
Query: 275 NGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTA 433
NG +IAT+ G+D+ + V+ +P S + + GR GR +S A
Sbjct: 608 NGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLA 660
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 39.5 bits (88), Expect = 4e-04
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Frame = +2
Query: 80 EKEVKLTNLLKEIASEKEN-KVIVFVETKKKVDDIA---RAVRRGGYKALAI--HGDKSQ 241
+K KL LLK + ++ + ++FVE K ++ + + +A + HG Q
Sbjct: 343 DKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQ 402
Query: 242 PE-------RDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIG 400
E + L +F+ G +LIAT VA G+DV V+ F+ + Y+ G
Sbjct: 403 GEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRG 462
Query: 401 R 403
R
Sbjct: 463 R 463
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +2
Query: 113 EIASEKENKVIVFVETKKKVDDIARAVRRGGYKALAIHGDKSQPERDAVLTEFRNGSTTI 292
E AS + + ++ + + + + A R+ G A A+ G+ + ER+ ++ +FR +
Sbjct: 260 EHASNRSSTLVFCINVEHSLK-VCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPV 318
Query: 293 LIATDVAARGLDVEDVKFVVNFDYPNSSEDYI-HRIGR 403
L+ V G D+ ++ ++ P SS + + IGR
Sbjct: 319 LVNCMVLTEGTDIPNIDCLM-IARPTSSPNLLTQMIGR 355
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.0
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Frame = +2
Query: 275 NGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYT----- 439
N + + +A RGL + + + + S Y H GR G Q+G +
Sbjct: 469 NLNNVVFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIPD 528
Query: 440 YFTSGDCRQA---RGLLAVLRETGQNP 511
Y+ S D ++ R +L +L+ G P
Sbjct: 529 YYKSNDFKKTDFRRCILFMLQRVGIRP 555
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 107 LKEIASEKENKVIVFVETKKKVDD 178
LKE+ EKEN +I+ E ++V+D
Sbjct: 990 LKELLEEKENALIMMEEEMRQVND 1013
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 350 VNFDYPNSS-EDYIHRIGRTGRCQQSGTAYTYFTSG 454
V F PN++ E + I TG C +SG A T+ SG
Sbjct: 311 VIFSTPNATLEHELSSIPWTGLCYESGFANTFLISG 346
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 221 IHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSED 382
IHGD P+ V ++NG+ I+ A + + DVK +V Y +D
Sbjct: 1000 IHGDVEFPKSSRVFGIYQNGAKKIIEHFIAAPKKELLPDVKQMVRIYYQRLMKD 1053
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +2
Query: 200 GGYKALAIHGDKSQPERDAVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSE 379
GG + + ++ P L G + + + D ARG D+K P SSE
Sbjct: 31 GGGVKVKVKEQEASPSDKNNLNPQSAGVSEVQVQDDTGARGSGARDLKVPKQMQAPKSSE 90
Query: 380 D 382
+
Sbjct: 91 E 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,301
Number of Sequences: 5004
Number of extensions: 39027
Number of successful extensions: 148
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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