Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_D03
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      118   3e-29

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  118 bits (285), Expect = 3e-29
 Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 7/148 (4%)
 Frame = +2

Query: 92  KLTNLLKEIASEKENK------VIVFVETKKKVDDIARAVRRGGYKALAIHGDKSQPERD 253
           K  +LLKEI  E+EN        +VFVE KKK D IA  +    Y   +IHGD+ Q +R+
Sbjct: 433 KKKDLLKEIL-ERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQRE 491

Query: 254 AVLTEFRNGSTTILIATDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTA 433
             L +F++G  +IL+AT VAARGLD+++V  V+N+D P   ++Y+HRIGRTGR    G A
Sbjct: 492 EALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRA 551

Query: 434 YTYFTSGDCRQARG-LLAVLRETGQNPP 514
            ++F   +    RG L+ +L++  Q+ P
Sbjct: 552 TSFFDPEEDAPLRGDLVRILKQANQSVP 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,705
Number of Sequences: 438
Number of extensions: 2626
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)