Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C24
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0553 - 7128786-7128998,7129087-7129242,7129577-7130380           29   2.2  
10_08_0716 + 20088311-20088637,20088730-20089107                       28   5.0  

>04_01_0553 - 7128786-7128998,7129087-7129242,7129577-7130380
          Length = 390

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 444 RSGEKLSGLCLRVNLLVESFVASDRFGEDGDR 539
           RSG     L  R++ LVE+ ++  RFG D D+
Sbjct: 214 RSGHHTDALVCRMDSLVEASISGTRFGSDFDK 245


>10_08_0716 + 20088311-20088637,20088730-20089107
          Length = 234

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 390 KSPLILVFVERFICLDSRRSGEKLSGLCL 476
           K+PL+L + ERF+ LD+ ++    SG  L
Sbjct: 189 KTPLLLAWAERFLALDAAKASMPESGRLL 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,029,832
Number of Sequences: 37544
Number of extensions: 277441
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)