Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C24
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50029-2|CAA90341.3|  537|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>Z50029-2|CAA90341.3|  537|Caenorhabditis elegans Hypothetical
           protein ZC504.2 protein.
          Length = 537

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 219 RRAHGPPDGVWLPSSMDYSNARG 151
           R+ H P D +W+P  + Y+NA G
Sbjct: 97  RKLHVPVDQIWIPDILLYNNADG 119


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -1

Query: 210 HGPPDGVWLPSSMDYSNARGRAKPLPTVLFCSISIQTSTARHGPYQVSLXRIGPALLASS 31
           + PP  + + + ++ S    +A PLPT  + + + Q       PYQ ++    P   ++ 
Sbjct: 62  YAPPPPMGIGAGVNPSGYVQQAPPLPTQGYSAYNQQPPPLPQQPYQTNMYPSNPGYSSTP 121

Query: 30  GSPR 19
           G P+
Sbjct: 122 GYPQ 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,533,074
Number of Sequences: 27780
Number of extensions: 235035
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)