Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C24
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.44 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.76 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.76 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.76 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.76 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 210 HGPPDGVWLPSSMDYSNARG 151
           H P + +WLP  + Y+NA G
Sbjct: 96  HVPSEHIWLPDIVLYNNADG 115


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 204 PPDGVWLPSSMDYSNARG 151
           PPD VW P  + ++NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 210 HGPPDGVWLPSSMDYSNARG 151
           H P D +W P  + Y+NA G
Sbjct: 104 HVPSDHIWRPDIVLYNNADG 123


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 210 HGPPDGVWLPSSMDYSNARG 151
           H P D +W P  + Y+NA G
Sbjct: 104 HVPSDHIWRPDIVLYNNADG 123


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 210 HGPPDGVWLPSSMDYSNARG 151
           H P D +W P  + Y+NA G
Sbjct: 100 HVPSDHIWRPDIVLYNNADG 119


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 204 PPDGVWLPSSMDYSNARG 151
           P + +WLP  + Y+NA G
Sbjct: 111 PSENIWLPDIVLYNNADG 128


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 204 PPDGVWLPSSMDYSNARG 151
           P + +WLP  + Y+NA G
Sbjct: 98  PSEHIWLPDIVLYNNADG 115


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 513 DRFGEDGDRXAPLRSVXILEFVRPMVANR 599
           +RFG+D +   P++++ + +   PM   R
Sbjct: 50  NRFGDDTESKLPVKAITLPDLSIPMQLGR 78


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 156 WHCCSPWTTVTTHHQVGRA 212
           W+C   + T   +HQ G A
Sbjct: 531 WNCVIQYNTRAENHQTGTA 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,599
Number of Sequences: 438
Number of extensions: 3089
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)