Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C21
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...   146   3e-36
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    83   3e-17
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    47   3e-06
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    27   2.3  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   4.0  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   4.0  
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    26   5.2  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   6.9  

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score =  146 bits (353), Expect = 3e-36
 Identities = 64/126 (50%), Positives = 90/126 (71%), Gaps = 1/126 (0%)
 Frame = +2

Query: 224 SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLL 403
           + +++++R+D+++++  +   PW+ DP FF+ +KISA+ALLKM+ H   G  LEVMG + 
Sbjct: 3   NQLENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQ 62

Query: 404 GKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHLG 583
           GKV+  ++I++DSFALPVEGTETRVNA  +A EY   Y    K V RHEN IGWYHSH  
Sbjct: 63  GKVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPN 122

Query: 584 IG-WLA 598
            G WL+
Sbjct: 123 YGCWLS 128


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 83.0 bits (196), Expect = 3e-17
 Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
 Frame = +2

Query: 320 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 496
           + IS+LALLKM+ H R G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A    
Sbjct: 30  VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPV 89

Query: 497 YEYMTAYIEAAKQVGRHENAIGWYHSHLGIG-WLA 598
           ++     ++  KQ GR E  +GWYHSH G G WL+
Sbjct: 90  FQ--KNMMDMLKQTGRPEMVVGWYHSHPGFGCWLS 122


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
 Frame = +2

Query: 314 KDIKISALALLKMV-MHARS--GGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA 484
           + + +  L LL  V  + RS  G    V+G+LLG+ + + + V +S+A+P E  E   + 
Sbjct: 15  QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASV 74

Query: 485 QAQAYEYMTAYIEAAKQVGRHENAIGWYHS 574
               + +M +  E  K++  +E  +GWYH+
Sbjct: 75  WFLDHNFMESMNEMFKKINANEKLVGWYHT 104


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 291 HGLAARISCCCFLSYRYISSTFETVSMLFAITQVF*AIDACESALVD 151
           H  A +   C   SYR ++  +E + +L     +F    +C   +VD
Sbjct: 588 HSKAVQQEFCSLYSYRIVNLLWEILGILLTPVLLFFTFPSCSQDIVD 634


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/89 (22%), Positives = 38/89 (42%)
 Frame = -3

Query: 534 CLAASIYAVMYSYACA*AFTRVSVPSTGSANESITIIVFASTLPSNSPMTSSVPPDLACI 355
           C   +I     SY+   + T ++    G+   S   I  +S+ PS+S  +SS  P  +  
Sbjct: 111 CSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSS 170

Query: 354 TIFSNARADIFMSLKKCGSFSHGLAARIS 268
              S++++    S     S S   +++ S
Sbjct: 171 KSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 55   FNQYSFEIKKNSHCIVIQLNLYSEYYFITHNGI-NKCRFTSIYC 183
            F  + F   K  +C++ +LN + E     +NG+ +    TSI C
Sbjct: 1296 FISHDFTQNKAKNCVLSELNFFLELLHSLNNGLPSDSHKTSIVC 1339


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 274 DILLLFLVVSIYIINVRNGFNVIRHHPSFLSNR 176
           D+L+LF  V+I +INV   +  + HH +  S R
Sbjct: 188 DLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLR 220


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = +2

Query: 365 RSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRV-NAQA----QAYEYMTAYIEAA 529
           R    +E+  L+    DA ++++      PV+ T TR+ N ++    Q  ++  A+ +  
Sbjct: 99  RENKAIELPSLVTQIKDAESIVIKHRQGSPVDNTPTRILNVESLFPPQLPDWEKAFHDIP 158

Query: 530 KQVGRHENAIGWYHSHLGIGWLAVXY 607
           K+   HE  +  Y  H+   W    Y
Sbjct: 159 KKEVAHE-LVTSYFQHVNWWWPTFVY 183


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 237 IYIDTTRNNNRISSPLNH 290
           IY+D T +N +I+ PL H
Sbjct: 90  IYVDPTSSNKKITIPLGH 107


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 289 WFSGEDILLLFLVVSIYIINVRNGFNVIRH 200
           W     I+ +F ++ IY+I   NGF  I +
Sbjct: 77  WAKRWSIVFMFCLMQIYVIWTSNGFGSIEY 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,868
Number of Sequences: 5004
Number of extensions: 67032
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)