Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_C21
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 159 1e-39
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 88 5e-18
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 88 5e-18
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 39 0.004
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270... 30 1.8
05_02_0105 + 6644264-6644344,6645573-6646097,6646185-6646410,664... 29 4.1
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 29 4.1
03_01_0291 - 2250349-2250966,2251062-2251444,2251604-2251981,225... 29 4.1
01_07_0106 - 41107673-41107942,41108362-41108574,41108877-411090... 29 4.1
11_06_0372 + 22781438-22781977 28 7.1
02_01_0065 - 477465-477512,477593-477685,477777-478316,478667-47... 28 7.1
01_05_0355 - 21330990-21331190 27 9.4
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 159 bits (387), Expect = 1e-39
Identities = 85/170 (50%), Positives = 107/170 (62%), Gaps = 30/170 (17%)
Frame = +2
Query: 179 IAQKTWVMANNIETVSN----VDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALL 346
+A++TW + NNI ++ +D IYRYD+ Q + KPW DPH F+ KISALALL
Sbjct: 1 MARQTWELENNIPAAASDPDALDAIYRYDEAAQARVQQEKPWANDPHPFRRAKISALALL 60
Query: 347 KMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEA 526
KMV+HAR+GGT+EVMGL+ GK + + ++VMD+FALPVEGTETRVNAQA AYEYM Y
Sbjct: 61 KMVVHARAGGTIEVMGLMQGKCEGDAIVVMDAFALPVEGTETRVNAQADAYEYMVEYSTI 120
Query: 527 AKQVGRH-------------------------ENAIGWYHSHLGIG-WLA 598
KQ+G H EN +GWYHSH G G WL+
Sbjct: 121 NKQIGSHHAIDHNVSEVSVFANTLMTDLAGRLENVVGWYHSHPGYGCWLS 170
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 88.2 bits (209), Expect = 5e-18
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 2/97 (2%)
Frame = +2
Query: 314 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 490
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTG--VSVEA 84
Query: 491 QAYEYMTAYIEAAKQVGRHENAIGWYHSHLGIG-WLA 598
+ + T ++ KQ GR E +GWYHSH G G WL+
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLS 121
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 88.2 bits (209), Expect = 5e-18
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 2/97 (2%)
Frame = +2
Query: 314 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 490
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTG--VSVEA 84
Query: 491 QAYEYMTAYIEAAKQVGRHENAIGWYHSHLGIG-WLA 598
+ + T ++ KQ GR E +GWYHSH G G WL+
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLS 121
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 326 ISALALLKMVMHARSGGTLEVMGLLLG-KVDANTMIVMDSFALP 454
+S LALLK+++HA + MG++LG +VD ++ V+D+F LP
Sbjct: 28 VSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLP 71
>02_03_0179 +
16025962-16026143,16026570-16026684,16026852-16027065,
16027346-16027397,16027411-16027696
Length = 282
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +2
Query: 152 STSADSQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKIS 331
STS+ Q + + W+ + + ++NV DI + +D A +K+ H D+ ++
Sbjct: 88 STSSLPQVATCKNNWLAVTSEKWLANVGDIDSVHNQAMRDCDAL--LKKEQHI--DVSLN 143
Query: 332 ALA-LLKMVMHARSGGTLEVMGLLLGKV 412
+ + K+ + R G+++V LLL +V
Sbjct: 144 SQSNAEKIAYYTRLNGSIDVTRLLLKQV 171
>05_02_0105 +
6644264-6644344,6645573-6646097,6646185-6646410,
6646498-6646875,6647035-6647417,6647513-6648130
Length = 736
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -3
Query: 531 LAASIYAVMYSYACA*AFTRVSVPSTGSANESITIIVFASTLPSNSPMTSSV---PPDLA 361
L ASI + S A A + V VPS G N SI + T+P++ + ++ P+
Sbjct: 642 LIASILRLANSLASAQSVASVEVPSVGDPNASIWKRIEDLTIPASDKIELAIFLTKPEQE 701
Query: 360 CITIFSNARAD 328
C + +D
Sbjct: 702 CFRSYLRVASD 712
>04_01_0097 - 998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -3
Query: 531 LAASIYAVMYSYACA*AFTRVSVPSTGSANESITIIVFASTLPSNSPMTSSV---PPDLA 361
L ASI + S A A + V VPS G N SI + T+P++ + ++ P+
Sbjct: 1062 LIASILRLANSLASAQSVASVEVPSVGDPNASIWKRIEDLTIPASDKIELAIFLTKPEQE 1121
Query: 360 CITIFSNARAD 328
C + +D
Sbjct: 1122 CFRSYLRVASD 1132
>03_01_0291 -
2250349-2250966,2251062-2251444,2251604-2251981,
2252147-2252294,2252382-2252906,2253990-2254112,
2254151-2254205,2254510-2254640
Length = 786
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -3
Query: 531 LAASIYAVMYSYACA*AFTRVSVPSTGSANESITIIVFASTLPSNSPMTSSV---PPDLA 361
L ASI + S A A + V VPS G N SI + T+P++ + ++ P+
Sbjct: 692 LIASILRLANSLASAQSVASVEVPSVGDPNASIWKRIEDLTIPASDKIELAIFLTKPEQE 751
Query: 360 CITIFSNARAD 328
C + +D
Sbjct: 752 CFRSYLRVASD 762
>01_07_0106 -
41107673-41107942,41108362-41108574,41108877-41109041,
41109431-41109649,41110205-41110324,41110427-41110489,
41111034-41111606,41111691-41111858,41112414-41112495,
41112667-41112743,41113031-41113101,41114315-41114363
Length = 689
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 40 QINFRFNQYSFEIKKNSHCIVIQLNLYSEY 129
+I+ R Q++FE+KK S C V +N +EY
Sbjct: 7 EIHPRELQFTFEVKKQSSCTVHLVNKSNEY 36
>11_06_0372 + 22781438-22781977
Length = 179
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 143 TMASTSADSQASIAQKTWVMANNIETVSNVDDI 241
T +TSA + +A+ W++A E +N DDI
Sbjct: 31 TTTTTSAMAPLPLAEVKWILAQKREPYTNPDDI 63
>02_01_0065 -
477465-477512,477593-477685,477777-478316,478667-478670,
479494-480063,480167-480204
Length = 430
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 503 IHMLVLEHSHVFQSPQLAARM 441
+H L +EHSH+ Q+PQ + M
Sbjct: 113 VHDLAVEHSHLLQTPQTSRLM 133
>01_05_0355 - 21330990-21331190
Length = 66
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 304 TFLQRHKDISSCIAEDGDACKIWWHTGGHGTITW 405
T L+RH+ + S +A+D +A + + G G I +
Sbjct: 12 TLLRRHRILESLLADDEEAARFFARLGDCGAINY 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,613,431
Number of Sequences: 37544
Number of extensions: 419511
Number of successful extensions: 1007
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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