Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_C21
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 197 6e-51
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 94 7e-20
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 85 4e-17
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 37 0.011
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical pr... 30 1.6
U58737-2|AAM69081.1| 479|Caenorhabditis elegans Hypothetical pr... 28 4.9
U58737-1|ABC48238.1| 474|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 28 6.4
U61946-3|AAC24395.2| 337|Caenorhabditis elegans Serpentine rece... 28 6.4
Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical pr... 27 8.5
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 27 8.5
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 27 8.5
DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin p... 27 8.5
AL033510-4|CAA22070.2| 343|Caenorhabditis elegans Hypothetical ... 27 8.5
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 197 bits (480), Expect = 6e-51
Identities = 89/143 (62%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
Frame = +2
Query: 173 ASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKM 352
+S+ Q+ W NN++ NVD I+ Y+ KQQ +I AKPW+KDPH+FK IKISA+ALLKM
Sbjct: 10 SSVPQRNWEKENNVQ---NVDSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKM 66
Query: 353 VMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAK 532
MHA+ GG LE+MGLL G++DAN+ I++D FALPVEGTETRVNAQAQAYEYMT Y E
Sbjct: 67 TMHAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCD 126
Query: 533 QVGRHENAIGWYHSHLGIG-WLA 598
GR E +GWYHSH G G WL+
Sbjct: 127 TEGRKEKVVGWYHSHPGYGCWLS 149
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 94.3 bits (224), Expect = 7e-20
Identities = 51/101 (50%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Frame = +2
Query: 302 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRV 478
P + + IS+LALLKM+ HARSG LEVMGL+LG VD T+ V D FA+P GT V
Sbjct: 23 PDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTV 82
Query: 479 NAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHLGIG-WLA 598
+ Y+ T +++ K VGR EN +GWYHSH G G WL+
Sbjct: 83 ESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLS 121
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 85.0 bits (201), Expect = 4e-17
Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Frame = +2
Query: 320 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 496
+ IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPV 92
Query: 497 YEYMTAYIEAAKQVGRHENAIGWYHSHLGIG-WLA 598
++ ++ KQ GR E +GWYHSH G G WL+
Sbjct: 93 FQ--AKMLDMLKQTGRPEMVVGWYHSHPGFGCWLS 125
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +2
Query: 320 IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDAN-TMIVMDSFALPVEGTETRVNA 484
+ + L LL +V H +++ V+G+LLG + + T+ + +SFA+P + + +
Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100
Query: 485 QAQAYEYMTAYIEAAKQVGRHENAIGWYHS 574
+Y+ + +V E +GWYH+
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHT 130
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +2
Query: 362 ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVG 541
A++ G + MG L+G + ++ V + FA+P + + Q + M I A K+
Sbjct: 29 AKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQM---ISALKKTS 85
Query: 542 RHENAIGWY 568
+E +GW+
Sbjct: 86 PNEQPVGWF 94
>Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical
protein C35C5.11 protein.
Length = 700
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 92 IVL*FSLTYILNIILSHTMASTSADSQASIAQKTWVMANNIETVSNVDDI 241
+VL + T ++ +++S+ + S S Q T +ANNI + N D I
Sbjct: 10 VVLLLAATVVVTVLISNYVHQLSMSSGTPTIQNTVSIANNIRQLINTDKI 59
>U58737-2|AAM69081.1| 479|Caenorhabditis elegans Hypothetical
protein ZK54.1a protein.
Length = 479
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 392 GLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHEN--AIGW 565
GLL G ++ +A P+E T+ A + +Y + + +G H I W
Sbjct: 157 GLLEGVTYPAMHVIWSRWAPPMEQTKLATFAFSGSYFGTVVAMPLSAYLGEHFGWPMIFW 216
Query: 566 YHSHLGIGWLAVXY*RVNTK 625
+ LG+ W V Y V+ +
Sbjct: 217 FFGALGVIWCMVWYKTVHDR 236
>U58737-1|ABC48238.1| 474|Caenorhabditis elegans Hypothetical
protein ZK54.1b protein.
Length = 474
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 392 GLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHEN--AIGW 565
GLL G ++ +A P+E T+ A + +Y + + +G H I W
Sbjct: 152 GLLEGVTYPAMHVIWSRWAPPMEQTKLATFAFSGSYFGTVVAMPLSAYLGEHFGWPMIFW 211
Query: 566 YHSHLGIGWLAVXY*RVNTK 625
+ LG+ W V Y V+ +
Sbjct: 212 FFGALGVIWCMVWYKTVHDR 231
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = -2
Query: 388 DLQCATRSCMHHHLQQCKS*----YLYVFEEMWVFLPW 287
D C+ R MH+H +Q + +LYVF E+ FLPW
Sbjct: 197 DQYCSPR--MHNHEEQGRVDDLWSWLYVFVELRAFLPW 232
>U61946-3|AAC24395.2| 337|Caenorhabditis elegans Serpentine
receptor, class h protein222 protein.
Length = 337
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 364 CMHHHLQQCKS*YLYVFEEMWVFLPWFSGEDILLLFLVVSIYIINVRN 221
C+H ++ YL V E+ W FL W E +L+ + I+I +++
Sbjct: 180 CLHPDVRNAPL-YLVV-EDRWKFLSWTVAEALLVALTLQGIFIFIIKS 225
>Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical
protein R06C7.4 protein.
Length = 292
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 389 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 496
+G+L V AN+ +V+DS L + TET A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 152 STSADSQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDI 274
S S D + S+ ++++ ETVSNV+ I ++K++QD+
Sbjct: 710 SESHDDRHSLEDMDVEVSSDGETVSNVEKIECMEEKKRQDL 750
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 152 STSADSQASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDI 274
S S D + S+ ++++ ETVSNV+ I ++K++QD+
Sbjct: 710 SESHDDRHSLEDMDVEVSSDGETVSNVEKIECMEEKKRQDL 750
>DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin
proteoglycan-3 protein.
Length = 292
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 389 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 496
+G+L V AN+ +V+DS L + TET A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186
>AL033510-4|CAA22070.2| 343|Caenorhabditis elegans Hypothetical
protein Y40H7A.6 protein.
Length = 343
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 325 LYVFEEMWVFLPWFSGEDILLLFLVVSIYIINVRNGFNVIRHHPSFL 185
L +W+ + +F I+LL SIY + V NV FL
Sbjct: 21 LEAMNSIWIKINFFLSTSIILLTFFASIYAVRVLKFHNVYSSGTQFL 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,034
Number of Sequences: 27780
Number of extensions: 382190
Number of successful extensions: 992
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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