Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_C18
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 134 4e-33
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 129 2e-31
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 0.55
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 27 0.97
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 0.97
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 2.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 6.8
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 6.8
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 6.8
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 6.8
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 6.8
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 24 9.0
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 24 9.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 9.0
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 134 bits (325), Expect = 4e-33
Identities = 66/99 (66%), Positives = 76/99 (76%)
Frame = +2
Query: 53 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 232
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 233 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYE 349
+T+FGGG+STGFALIYD+ + KKFEP +RL R G E
Sbjct: 60 LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAE 98
Score = 29.1 bits (62), Expect = 0.32
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 367 QQRKERKNRMKKVRGT 414
QQRK+RKNR KKV GT
Sbjct: 106 QQRKQRKNRGKKVFGT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 129 bits (311), Expect = 2e-31
Identities = 60/96 (62%), Positives = 73/96 (76%)
Frame = +2
Query: 53 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 232
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 233 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHG 340
+T++GGG++TGFALIYD ++ KKFEP +RL R G
Sbjct: 60 LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95
Score = 29.1 bits (62), Expect = 0.32
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 367 QQRKERKNRMKKVRGT 414
QQRK+RKNR KKV GT
Sbjct: 106 QQRKQRKNRGKKVFGT 121
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 28.3 bits (60), Expect = 0.55
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 88 FASANSRCSFTHFELFSII 32
F+S SRCSFT FE+ SI+
Sbjct: 776 FSSVISRCSFTDFEINSIL 794
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 27.5 bits (58), Expect = 0.97
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 48 SK*VKEQRLFALANS*PTDCWRASRWFAMFY--IQENQLSARPRSVR 182
+K VK++R+ AL N WR W A ++ IQ+ + S P S R
Sbjct: 149 TKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIRNSLTPASSR 195
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 0.97
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 170 EIREKLAKMYKVTPDVVFVFGFKTNFGG 253
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 2.2
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 217 SVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQ-AQVSPPRPVREEEA 360
S R + +LRR + DLR +R G E RA+ A+ PR V E A
Sbjct: 385 SEAFRRRQELRRERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVA 433
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +1
Query: 277 DLRHTRSGQEVRAQAQVSPPRPVREEEAHAQQRKERKNRMKK 402
+ R R Q ++ + + R++ Q++KER+ ++KK
Sbjct: 636 EARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKK 677
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 252 PPKFVLKPNTNTTSGVTLYILASFS 178
PPK LKP+ +T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 259 FATSEVCLETEYEHYIGSNL 200
+A SE LE EYE +GS L
Sbjct: 1296 YAASENILEIEYEDEVGSGL 1315
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 180 SRISVLLTVGFPGCKTSQTICLRANNL 100
SRI + ++G K Q++CLR N +
Sbjct: 48 SRIQSMASLGLERFKNLQSLCLRQNQI 74
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 331 PPRPVREEEAHAQQRKERKNRMKKVRGTRN 420
PPR + E + +ERK R ++ RN
Sbjct: 154 PPRKMTSSEKTRSENRERKKRWREQNEERN 183
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 229 EYEHYIGSNLVHFGELLTDLGLADS 155
+YE + G VHF LT+ G+ ++
Sbjct: 985 DYESHHGEGNVHFNVTLTEAGMKEA 1009
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 61 RNSDYSHSQIHDQQIVGAQADGLRCFTSRKTNCQQDRDP 177
+NS++S + +Q + ADG R + + Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.2 bits (50), Expect = 9.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 277 DLRHTRSGQEVRAQAQVSPPRPVREEEAHAQQRKERKNRMKKVRG 411
+L RS Q +A AQ +EEE Q++K +KN +G
Sbjct: 1783 NLNKDRSQQAKQAAAQNVADLVRQEEEKEKQKQKAKKNAESGKKG 1827
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,601
Number of Sequences: 5004
Number of extensions: 37151
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -