Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_C18
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 143 5e-35
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 140 6e-34
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 131 3e-31
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 31 0.54
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 0.95
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.2
07_01_0027 - 195879-196093,196242-196278,196985-197041,197519-19... 28 3.8
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 3.8
02_01_0526 - 3830705-3830932,3831684-3831748,3831958-3832104,383... 27 5.1
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 27 6.7
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 27 6.7
01_02_0086 - 10979236-10979396,10980288-10980798,10984446-109849... 27 6.7
11_06_0081 + 19886848-19888050,19888243-19888896 27 8.8
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 27 8.8
01_07_0042 + 40697153-40697407,40697479-40698081 27 8.8
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 143 bits (347), Expect = 5e-35
Identities = 66/104 (63%), Positives = 84/104 (80%), Gaps = 1/104 (0%)
Frame = +2
Query: 71 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 247
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 248 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRNSVK 379
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +R +K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMK 114
Score = 31.1 bits (67), Expect = 0.41
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 355 EAHAQQRKERKNRMKKVRGTRNLK 426
E +Q KERKNR KK+RG + K
Sbjct: 107 EKSRKQMKERKNRAKKIRGVKKTK 130
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 140 bits (338), Expect = 6e-34
Identities = 65/104 (62%), Positives = 83/104 (79%), Gaps = 1/104 (0%)
Frame = +2
Query: 71 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 247
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 248 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRNSVK 379
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +R +K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMK 114
Score = 31.1 bits (67), Expect = 0.41
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 355 EAHAQQRKERKNRMKKVRGTRNLK 426
E +Q KERKNR KK+RG + K
Sbjct: 107 EKSRKQMKERKNRAKKIRGVKKTK 130
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 131 bits (316), Expect = 3e-31
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = +2
Query: 71 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 247
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 248 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 334
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 31.1 bits (67), Expect = 0.41
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 355 EAHAQQRKERKNRMKKVRGTRNLK 426
E +Q KERKNR KK+RG + K
Sbjct: 135 EKSRKQMKERKNRAKKIRGVKKTK 158
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 30.7 bits (66), Expect = 0.54
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 283 RHTRSGQEVRAQAQVSPPRPVREEEAHAQQRKERKNRMKK 402
+H R QE A+ Q + R REEE + RKE + R+KK
Sbjct: 423 KHVREMQEALARRQEAEERKKREEE--ERLRKEEEERLKK 460
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 0.95
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 265 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 366
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 231 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 52
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>07_01_0027 -
195879-196093,196242-196278,196985-197041,197519-197680,
198653-198760
Length = 192
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 331 PPRPVREEEAHAQQRKERK 387
PP+P++EEEA A++ KE +
Sbjct: 31 PPQPLQEEEARARKAKEEE 49
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 180 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 52
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>02_01_0526 -
3830705-3830932,3831684-3831748,3831958-3832104,
3832208-3832256
Length = 162
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 337 RPVREEEAHAQQRKERKNRMKKVRGTR 417
R R+E+A ++ +ER+ R KK G R
Sbjct: 35 RSSRDEQAEEEEEEERRRRKKKKHGDR 61
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 328 SPPRPVREEEAHAQQRKERK 387
SPP+P E +H QQ+KE K
Sbjct: 144 SPPQPGGEAASHQQQQKEMK 163
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 205 YSRCSVRIR-FQDKLRRWQINWI 270
+ RC VR+ F KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156
>01_02_0086 -
10979236-10979396,10980288-10980798,10984446-10984977,
10984983-10985002
Length = 407
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 126 FAMFYIQENQLSARPRSVRSSPKCTRL 206
F++ + ++N+ + PRS S+PKC L
Sbjct: 381 FSIQFYKKNETATSPRSSSSAPKCDSL 407
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -1
Query: 300 ARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTV 154
++ VS +++ P PPP P TN + +Y+ + ++VL V
Sbjct: 252 SKPDVSQLRSPPPPPPPPPAAPAPTTNRKNHTGVYVGIGAAAVAVLAVV 300
>06_03_0785 -
24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 26.6 bits (56), Expect = 8.8
Identities = 25/107 (23%), Positives = 51/107 (47%)
Frame = +2
Query: 65 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 244
+++I +F+ R R+++V +L K E R K A+ + +V+ + G N
Sbjct: 169 SSSISIGEFVVGRQKEREELVHQLLEQS----DKPESRSKGARSTSL--EVITIVG---N 219
Query: 245 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRNSVKNV 385
G GK+T LIY+ + F+ + + +++K R T+ + +
Sbjct: 220 GGIGKTTLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKEILTTI 266
>01_07_0042 + 40697153-40697407,40697479-40698081
Length = 285
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 306 FLARSSVS*IKANPVDLPPPKFVLKPN-TNTTSGVTLYILAS 184
+ +SSV + + LPPP FV P +NT + + Y + S
Sbjct: 134 YRTQSSVRSVSSTCKPLPPPPFVRDPKFSNTRTTINSYAVVS 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,274,323
Number of Sequences: 37544
Number of extensions: 253723
Number of successful extensions: 882
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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