Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C17
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    28   0.80 
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    27   2.4  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   2.4  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   4.2  
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    25   5.6  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   5.6  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   5.6  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    25   9.8  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   9.8  

>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 267 IIFPLASRPPISPFVVILKN*NLRHRIRPS 178
           I  P+A+ P I+P  V L   N+ H + PS
Sbjct: 405 ISMPVANMPAIAPISVALPENNIEHSLEPS 434


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 161 LLVHYFKHNYFICLYQNNILNSVN 90
           LL+H+  H    C+Y  +I+N  N
Sbjct: 73  LLIHFRNHRNITCIYDLDIINPYN 96


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 245 LDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKI-QEAIDQL 367
           LDA  K I  E  +S    E+L  ++ W +QG I ++  DQL
Sbjct: 450 LDAESKGIAYEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQL 491


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 212  FKMTTNGDIGGLDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLL 370
            +KM  +  +  + AS  +   E  + A C  KL  WK        QE++  +L
Sbjct: 1581 YKMGDSSKLVDILASSSVSSEERSFLARCFHKLGKWKKSLQDSVNQESVRDIL 1633


>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 260 KIIKMEVDYSATCDEKLPLWKSWAAQG 340
           +IIK++++ +  CD++L   + W A+G
Sbjct: 159 RIIKIKLESARICDQRLNNVQKWNARG 185


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 246 RPPISPFVVILKN*NLRHRIRPSEFWQVFI 157
           R PIS FV  L +  LRHR+  S+F + F+
Sbjct: 56  RNPISLFVRGLSHPFLRHRLSKSQFNEWFL 85


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 95  LSSEYCFGINI*SNYV*N-NEPINTCQNSLG 184
           L++  CFGIN+ +N+    N  I+ C N  G
Sbjct: 312 LNNSECFGINLDANWAFGFNGNIDPCSNEYG 342


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +3

Query: 339 AKFKKL*ISYWLL-KNRLXLVLIWFP-----LKNPNDXGQIFFEXKTGLPQXPL 482
           A F KL  +YWL  K++    + W       ++   +     F+ KTGLP+ P+
Sbjct: 203 ASFLKLSYTYWLYTKDQSIFTVKWLAAVERIIQVLEEQSSPSFDEKTGLPKDPV 256


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 143 KHNYFICLYQNNILNSVNVTIHKII 69
           K NYFI L  N I+N     +H+ I
Sbjct: 346 KDNYFIALINNGIINIELPLLHRRI 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,943
Number of Sequences: 5004
Number of extensions: 38941
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)