Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_C15
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219... 39 0.002
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 28 4.3
10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056 27 5.7
03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371... 27 5.7
05_06_0195 + 26291126-26291316,26292432-26292618 27 7.5
01_05_0599 - 23550663-23550849,23553236-23553417 27 7.5
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 27 10.0
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 27 10.0
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 27 10.0
>10_06_0087 -
10520708-10520823,10521041-10521130,10521571-10521901,
10522248-10522409,10522506-10522726,10523852-10524056
Length = 374
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 176 NIFMKYARVELAPPKLSELPQIRQGIGNLITSAKTGAWK-RQTVKEATLNVLVGAEVIFW 352
N+F+ + L P+ S+ PQ + N I +KTG WK TV+ T V+VG +V
Sbjct: 53 NVFVGM-NISLIDPRNSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVSLD 111
Query: 353 FYIGECIGKRHLVWI 397
Y GE + W+
Sbjct: 112 HYEGEAPSGKRTGWV 126
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 212 PPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAE 340
P + L ++ + +G + + KTG WK ++EA + GA+
Sbjct: 320 PAEFQRLQEVERHLGRCMDARKTGDWK-SALREADAAIANGAD 361
>10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056
Length = 324
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = +2
Query: 269 SAKTGAWKR----QTVKEATLNVLVGAEVIFWFYIGECIGKRHLVWI 397
+ KTG WK + V E T +VG FY+G + W+
Sbjct: 86 ATKTGYWKATGKDRIVHEGTTRAVVGMRKTLVFYLGRAPNGQKTTWV 132
>03_01_0490 +
3711009-3711383,3712104-3712202,3713209-3713461,
3713908-3714090,3714091-3714227,3714511-3714710,
3714797-3714994,3715109-3715271
Length = 535
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 215 PKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIFW--FYIGECIG 376
P +++LP G+ + + G WK +T E +++ V A + W Y+G+ G
Sbjct: 296 PNIADLPTGTAGVWRVSAINEAGGWKDRTTVE-DMDLAVRASLKGWQFLYVGDIRG 350
>05_06_0195 + 26291126-26291316,26292432-26292618
Length = 125
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 290 KRQTVKEATLNVLVGAEVIFWFYIGECIGK 379
K V+ A + L G E+ WF +GE +G+
Sbjct: 87 KDLNVEHAGVAALFGIELYAWFCVGEIVGR 116
>01_05_0599 - 23550663-23550849,23553236-23553417
Length = 122
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 287 WK-RQTVKEATLNV--LVGAEVIFWFYIGECIGK 379
WK R+ +K L + L G E+ WF +GE +G+
Sbjct: 80 WKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGR 113
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 248 GIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIFWFYIGECIGKR 382
G+GN+ +S GA+K++++ E N+ + I IG+ GKR
Sbjct: 221 GLGNVSSSRSEGAYKKRSLSEFLQNIPSSKQSI----IGDGPGKR 261
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 215 PKLSELPQIRQGIGNLITSAKTGAWKRQTVKEA-TLNVLVGAE 340
PKL LP++R + N + AW RQT+ EA T V++G E
Sbjct: 89 PKL--LPRLRNVLVNAV------AWNRQTITEASTKEVILGTE 123
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 327 RTFSVASLTVCLFHAPVL--ALVIRLPMPC 244
R+ SV S +VC HAP A V P+PC
Sbjct: 51 RSLSVRSASVCYPHAPSTSGAFVADSPLPC 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,074
Number of Sequences: 37544
Number of extensions: 161518
Number of successful extensions: 290
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -