Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C06
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083...    31   0.75 
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700...    29   2.3  
06_03_1478 - 30420097-30420651                                         29   4.0  
06_02_0011 - 10569471-10572245                                         28   5.3  
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674...    28   7.0  
01_06_0208 - 27540077-27540992,27541310-27541497                       28   7.0  
12_01_0257 + 1898950-1899636                                           27   9.3  

>04_03_0229 -
           13006869-13007017,13007925-13008089,13008178-13008332,
           13010276-13011021
          Length = 404

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 253 YPRPGRDGASTLQQTPSLDASSALRPFTSRTRFS 354
           +PR G DG   L QTPS  A+ AL   T+ T  S
Sbjct: 83  FPRRGEDGVHLLSQTPSSPAAWALSAATTGTAAS 116


>10_03_0010 +
           7007694-7007888,7007994-7008059,7008161-7008334,
           7009232-7009306,7009384-7009510,7012280-7012371,
           7012496-7012566,7012683-7012792,7013016-7013053,
           7013825-7013960,7014382-7014456,7014574-7014697,
           7014917-7015013,7015426-7015451,7016180-7016255,
           7016499-7016636,7016735-7016872
          Length = 585

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 317 PPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 454
           PP   +L + +FP   PA D  +L   L +RH   C P P     V+
Sbjct: 17  PPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63


>06_03_1478 - 30420097-30420651
          Length = 184

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 263 GRGYRVHHDRCRAPFQEKQFILG*R 189
           G+ YR   DRC+APF+ +Q + G R
Sbjct: 103 GKRYRYVCDRCKAPFETRQALGGHR 127


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 344 PAFPRCKPAPDDSVLTQALLKRHTEL--CPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFA 517
           PAFP  K  P  SVL    L R+     C S +  A++++++  L T L    +      
Sbjct: 227 PAFPPYKHQPATSVLRSNYLDRYKLFVSCNSTSFVASLVTVILLLSTELSKHGIRSKAVI 286

Query: 518 ACQLEEVR-QVGSYKKG 565
            C + ++   VG+Y  G
Sbjct: 287 VCVVADLLCLVGAYAAG 303


>10_08_0851 -
           21065832-21065948,21066361-21066705,21067181-21067489,
           21067574-21067648,21067754-21067917,21067994-21068432
          Length = 482

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 274 GASTLQQTPSLDASSALRPFTSRTRFS*MQTGTRRLRAHSGP 399
           G  +   TPS+DA +  R F+  + FS    G+     HSGP
Sbjct: 20  GCCSSSTTPSMDAVNLSRTFSDVSSFSEEHGGSGSSVDHSGP 61


>01_06_0208 - 27540077-27540992,27541310-27541497
          Length = 367

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
 Frame = +1

Query: 394 GPSKEAHGAMSVTYRSSSCFEPRHETADSIGQYCCGSRRICSLP--TRRSAASWVLQEGD 567
           GPS EA GA     R +     R   A    Q  CG     + P   RR   SW  ++G 
Sbjct: 65  GPSAEAAGAWGSVVRLARARRRRAGAACPARQQRCGGFATAARPGNPRRGDVSWDARDGA 124

Query: 568 NDGREECC*YRGHHE 612
              R       GH E
Sbjct: 125 RAARRRRQRRVGHAE 139


>12_01_0257 + 1898950-1899636
          Length = 228

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 523 PTRRSAASWVLQEGDNDG 576
           PTRR+AASW+    D DG
Sbjct: 58  PTRRTAASWLAVTFDGDG 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,106,745
Number of Sequences: 37544
Number of extensions: 325281
Number of successful extensions: 861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)