Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C06
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf (pumilio/...    28   4.8  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    28   6.3  

>Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical
           protein ZK858.2 protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/90 (25%), Positives = 39/90 (43%)
 Frame = +2

Query: 332 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 511
           LLA P     +P P    +  + L+  T +  SPTD   +  LVT    +   +++ P +
Sbjct: 17  LLATPPVAIRRPLPYPRDIISSPLEVATPVTVSPTDFMPIRELVTTPYHISTPVLITPVD 76

Query: 512 FAACQLEEVRQVGSYKKGTMMAGKNVADIV 601
             +   E VR     +  T  A ++V + V
Sbjct: 77  ARSISREIVRVNRIRRVRTRQASRSVFNSV 106


>AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 4 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 602 PRYQQHSSRPSLSPSCR 552
           PRYQQ +S PS++P+ R
Sbjct: 82  PRYQQRASTPSMTPTAR 98


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 397 PSKEAHGAMSVTYRSS--SCFEPRHETADSIGQYCCGSRRICSLPTRRSAASWVLQ 558
           P KE H  +++    +    F P HE+       C G+  IC++P    A SW+++
Sbjct: 12  PKKEEHPLVAIVILDAFDQRFAPTHESYP-----CFGTIPICNVPAINFALSWLMR 62


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
           protein Y111B2A.14 protein.
          Length = 1481

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 295 TPSLDASSALRPFTSRTRFS*MQTGTRRLRAHSGPSKE 408
           TP   +S+ALRP TS T      T T +    S  S E
Sbjct: 822 TPKASSSTALRPSTSSTPSQQQSTSTAKAMTSSSTSAE 859


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,593,607
Number of Sequences: 27780
Number of extensions: 269176
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)