Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C06
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 397 PSKEAHGAMSVTYRSSSCFEPRHE 468
           P +  HG ++ T   +SC++ R+E
Sbjct: 82  PIEPWHGVLNATVLPNSCYQERYE 105


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 397 PSKEAHGAMSVTYRSSSCFEPRHE 468
           P +  HG ++ T   +SC++ R+E
Sbjct: 82  PIEPWHGVLNATVLPNSCYQERYE 105


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 424 SVTYRSSSCFEP 459
           SVT ++++CFEP
Sbjct: 164 SVTGKTTACFEP 175


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 320 PFDLLLAEPAFPRCKPAPDDSVL 388
           P DL+  EP+ P C+  P   +L
Sbjct: 74  PKDLVYLEPSPPFCEKNPKLGIL 96


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 320 PFDLLLAEPAFPRCKPAPDDSVL 388
           P DL+  EP+ P C+  P   +L
Sbjct: 75  PKDLVYLEPSPPFCEKNPKLGIL 97


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 356 RCKPAPDDSVLTQALLKRHTELCPSPT 436
           +C+   D + L+  ++ R  EL P PT
Sbjct: 177 KCEVLYDIAPLSDFVIHRSPELVPMPT 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,756
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)