Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C05
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    27   2.3  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   4.1  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   7.1  

>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 45  VQMFVVH*HADEHMLVIPVSYKHRVTILTGVLTSFDIKTKNILYLYGLKFI 197
           VQ FV H      M  +P++  + VT+L  ++ +  IK+  +  ++G+  I
Sbjct: 117 VQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHI 167


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 336 SKFLDFMENPLS*QHCFLFVKCARGTP 256
           +K LD M+N +S   C   + CAR  P
Sbjct: 207 AKRLDVMQNSMSVYRCHTIMNCARTCP 233


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 413 SKRLKSIHFTGF*MFYDNNISKYILFKRCDLNLTRKCCENLEFPST-SKIKLVQN 574
           S+    IHF      +++N+  Y++ + C L    +C  N +FP+  ++ ++++N
Sbjct: 65  SRHRNIIHFVES---FEDNVYYYVVLEYCPLGDLYECILNNDFPNAKNQPEMIKN 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,411
Number of Sequences: 5004
Number of extensions: 46049
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)