Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C01
         (401 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    23   1.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   4.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   7.9  

>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 16  SLSPLLVYISGGIASLK*RNESIGSPTF 99
           SL P+LV+I GG       N+ I  P F
Sbjct: 71  SLYPVLVWIHGGYFIFGSGNDDIYGPEF 98


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 89  ARPLVSVYSEKSETVQGCSQAPPXSYSRRP 178
           + PLVS  SEK E     +  P  S +R+P
Sbjct: 111 SEPLVSPKSEKEEKDMETTLTPCASPNRKP 140


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 241  CVSKEAGHQTSAESW 285
            C  K+ GH+ S  SW
Sbjct: 1152 CEEKKPGHKPSTSSW 1166


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 174  AHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQCRIMGYR 293
            A TSG G+    FY+ E     + + G  S N   I  +R
Sbjct: 1376 AQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 174  AHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQCRIMGYR 293
            A TSG G+    FY+ E     + + G  S N   I  +R
Sbjct: 1376 AQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 267 NQCRIMGYRTCCCPN 311
           +Q R  G  TC CPN
Sbjct: 281 SQRRYTGRATCDCPN 295


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 334 YHHHGHAEFGQQHV 293
           +HH GH    Q HV
Sbjct: 323 HHHAGHHIHAQHHV 336


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 240 LREQGGWSPNQCRIMG 287
           L E+    PN CRI G
Sbjct: 241 LLEEDNQKPNVCRICG 256


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,637
Number of Sequences: 336
Number of extensions: 2157
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)