Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_C01
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   126   6e-30
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   3.8  
U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical pr...    26   8.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    26   8.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  126 bits (304), Expect = 6e-30
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +1

Query: 163 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 342
           VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26  VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85

Query: 343 SGQGAFGNMCRGGRMFAP 396
           SGQGAFGNMCRGG MFAP
Sbjct: 86  SGQGAFGNMCRGGHMFAP 103



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 89  ARPLVSVYSEKSETVQGCSQAP 154
           ARPLV+VY EK E  Q   + P
Sbjct: 3   ARPLVTVYDEKYEATQSQIRLP 24


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
 Frame = +1

Query: 142 QPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV 321
           +PS S+    AP +P          + N R    V K   H+    SW T     +  R 
Sbjct: 111 KPSVSKIAEAAP-KPIFKVARGTVKTVNKRGTKGVQKMPNHRLEGNSWETNGLQNQTARG 169

Query: 322 RGGGTHR---SGQGAFGNMCRGGR 384
            GGG  R   SG    G   RGGR
Sbjct: 170 GGGGRGRGRGSGGRGRGGFNRGGR 193


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 261 SPNQC--RIMGYRTCCCPNSAC 320
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 261 SPNQC--RIMGYRTCCCPNSAC 320
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical
           protein F19C7.8a protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 343 TYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 251
           T+GYHH+ HA   Q  +   + R      PP
Sbjct: 67  THGYHHNPHARLSQPDIHSAIYRPHHYYSPP 97


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 379 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 296
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 380 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 282
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 380 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 282
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 310 IPRVRGGGTHRSGQGAFGNMCRGG 381
           +P   GGG   S Q A GN C GG
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGG 49


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
           protein F26H11.2c protein.
          Length = 2266

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 383 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDS 276
           RP R  LPK    D + PPP  +  RA  R  P D+
Sbjct: 91  RPRRSRLPKRYFDDGYSPPPTKK--RAAQRETPSDA 124


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
           protein F26H11.2b protein.
          Length = 1693

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 383 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDS 276
           RP R  LPK    D + PPP  +  RA  R  P D+
Sbjct: 91  RPRRSRLPKRYFDDGYSPPPTKK--RAAQRETPSDA 124


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
           protein F26H11.2a protein.
          Length = 1691

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 383 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDS 276
           RP R  LPK    D + PPP  +  RA  R  P D+
Sbjct: 91  RPRRSRLPKRYFDDGYSPPPTKK--RAAQRETPSDA 124


>Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical
           protein K02C4.5 protein.
          Length = 422

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 389 NIRPPRHMLPKAP*PDLWVPPPRT 318
           NIRPP    PK   PD   PPP+T
Sbjct: 312 NIRPPIAQKPKLIQPDT-TPPPKT 334


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 379 HHDTCYRRHPDRTYGYHHHGH 317
           HH   +  H D+   +HHHGH
Sbjct: 698 HHGAHHGHHDDKE-NHHHHGH 717


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,229,833
Number of Sequences: 27780
Number of extensions: 202861
Number of successful extensions: 730
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)