Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_B24
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0519 + 3758919-3759090,3759673-3759833,3760633-3760666,376... 52 3e-07
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 32 0.35
12_02_1240 + 27280583-27281101,27281500-27282138 29 1.8
03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423... 29 3.2
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 28 4.3
06_03_0475 - 21217253-21217639,21217717-21218757 28 5.6
03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715... 27 7.5
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 27 9.9
10_07_0043 - 12317397-12317535,12317832-12318087,12318194-12318410 27 9.9
05_05_0361 - 24406424-24406666,24407505-24407567,24407792-244079... 27 9.9
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 27 9.9
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 27 9.9
>06_01_0519 +
3758919-3759090,3759673-3759833,3760633-3760666,
3760767-3760860,3761305-3761308
Length = 154
Score = 52.0 bits (119), Expect = 3e-07
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = +2
Query: 149 VHDVPMSVITRPFIPEL--DEAKVESLMETIQKQELAGNVPPIDILWIKGSQGGDYYYSF 322
V ++P+ I RP + D AKV+ LM++I+ L ID+L + G YY F
Sbjct: 75 VMEIPLDKIRRPLMRTRANDPAKVQELMDSIRVIGLQ-----IDVLEVDG-----VYYGF 124
Query: 323 GGCHRFAAYKRLNRPTIPAKLIKSTVSDLK 412
GCHR+ A++RL PTI K+ + T L+
Sbjct: 125 SGCHRYEAHQRLGLPTIRCKVRRGTKETLR 154
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -3
Query: 406 IGNCRFDQFGGNRGTIQTFIGC------ESVASAETVVVIATLRAFDPKYVYWRD 260
+GNC+ FGG+ T T I C S A T+V+ TLR + P V ++
Sbjct: 761 VGNCKTIYFGGHESTAVTAIWCLMLLATHSEAMEVTMVIQETLRLYPPASVMMQE 815
>12_02_1240 + 27280583-27281101,27281500-27282138
Length = 385
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 215 ESLMETIQKQELAGNVPPIDILWIKGSQGGDYYYSFGGCHRFAAYKR 355
E + T+ E AG + + W+ S+GG + +FGG A+ R
Sbjct: 296 EHYLPTVLSIEAAGRIANRSVTWVDWSRGGAHPATFGGADVGEAWVR 342
>03_02_0781 +
11141469-11141486,11141855-11141978,11142024-11142340,
11143219-11143509,11143751-11143956,11144048-11144327
Length = 411
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 216 STLASSSSGMKGLVITDIGTSWTSYLVGAVYTCH 115
S SSG+KGL + D+GT T+++ V CH
Sbjct: 60 SNFGIGSSGLKGLGLCDVGTGKTTFMHRLV--CH 91
>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 215 ESLMETIQKQELAGNVPPID--ILWIKGSQGGDYYYSFGGCHRFAAYKRLNRPTIPAKLI 388
E T+Q E+ G P +D +L I S G Y F G HR + R +IP L+
Sbjct: 953 EQSYATLQILEVEG-CPKLDEFLLQIFMSSGVQSTYQFLGIHRLKIHNDFLRASIPLLLL 1011
Query: 389 KSTVSDL 409
S +SD+
Sbjct: 1012 NS-LSDI 1017
>06_03_0475 - 21217253-21217639,21217717-21218757
Length = 475
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 166 VGYHQALHSGAGRGQSGISHGNNTEARAS 252
+GYHQA +GAG +HG++ A A+
Sbjct: 220 LGYHQAAAAGAGAALFHPTHGDDAAAAAA 248
>03_02_0939 +
12571052-12571173,12571219-12571309,12571413-12571512,
12571726-12571807,12571897-12571953,12572632-12572713,
12572792-12572884,12573984-12574047,12574161-12574246,
12574329-12574430,12574526-12574609,12574885-12574945,
12575010-12575091,12575173-12575250,12575867-12575931,
12576108-12576185,12576278-12576450
Length = 499
Score = 27.5 bits (58), Expect = 7.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 198 WTRPKWNLSWKQYR 239
W RP W+ WK YR
Sbjct: 165 WPRPVWHAPWKNYR 178
>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 27.1 bits (57), Expect = 9.9
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Frame = -3
Query: 406 IGNCRFDQFGGNRGTIQTFIGC----------ESVASAE----TVVVIATLRAFDPKYVY 269
+GNC+ FGG+ T T I C + A AE T+V+ TLR + P V
Sbjct: 1303 VGNCKTIYFGGHESTAVTAIWCLMLLATHPEWQERARAEAMEVTMVIQETLRLYPPASVM 1362
Query: 268 WRD 260
R+
Sbjct: 1363 MRE 1365
>10_07_0043 - 12317397-12317535,12317832-12318087,12318194-12318410
Length = 203
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 181 ALHSGAGRGQSGISHGNNTEARASRQRPANR 273
A+ GAGRG G HG EA R A +
Sbjct: 96 AVEGGAGRGTRGAGHGAAEEAMRRRGEEATQ 126
>05_05_0361 -
24406424-24406666,24407505-24407567,24407792-24407902,
24407986-24408069,24408748-24408848,24408983-24409589
Length = 402
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 163 NVGYHQALHSGAGRGQSGISHGNNTEARASRQRPANRHTLDQR 291
NVG ++ LHS G+ +G + G N+ S ++ +D+R
Sbjct: 123 NVGVNKYLHSPNGKDVNGKNSGANSNGSNSSGNNSSNSAVDKR 165
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +2
Query: 347 YKRLNRPTIPAKLIKS--TVSDLKTYLGS 427
+K+ ++ + A+LIK+ V DLKTYLG+
Sbjct: 199 FKKEDQKVVDAELIKAIEAVPDLKTYLGA 227
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 238 EARASRQRPANRHTLDQRLSRWRLLLQFRRM 330
EARAS P+++ T SR LLL++ R+
Sbjct: 495 EARASLSAPSSQATTQDAASRRALLLRYHRL 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,217
Number of Sequences: 37544
Number of extensions: 306736
Number of successful extensions: 713
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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