Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B24
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-41|CAB16523.1|  444|Caenorhabditis elegans Hypothetical p...    29   2.9  
AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z99281-41|CAB16523.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.22a protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 287 KGSQGGDYYYSFGGCHRFAAYKRLNRPTIPAKLIKSTVSDLKTYLGSSTPDLK*T 451
           K     + + SFG  HR  A K+ +   +P   ++  VSDL+ Y+    PD + T
Sbjct: 195 KQQTANEAFSSFGDKHRMIA-KKQSESAVP---LQKMVSDLQVYIDHVVPDTRLT 245


>AC006832-8|AAF40000.1|  465|Caenorhabditis elegans Hypothetical
           protein ZK355.6 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -2

Query: 473 DY*ITLATFILDRVCCYRDKSLNRKL*I*SVWRESWDDSNVYRLRICGIRRNC 315
           DY   L T  L + C +R ++ N KL   SV  +SW    +Y L++ G RR+C
Sbjct: 130 DY-FLLETDRLSKECAFRVEN-NEKLNASSVC-QSWFLQGMYSLKVSGNRRDC 179


>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 202 RGQSGISHGNNTEARASRQRPANRHTL 282
           RG SG+S+ N    R +R+ P+NR  +
Sbjct: 657 RGPSGVSNSNIMRDRVTREVPSNRRPI 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,204,232
Number of Sequences: 27780
Number of extensions: 251530
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)