Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B20
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   1.8  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   2.3  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   3.1  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    25   7.1  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.1  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   7.1  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +1

Query: 13   RSLNVKN--NEICVQNFIKRC 69
            + LN KN  NE+C++NF+ +C
Sbjct: 1861 KDLNCKNSMNEMCIENFLMKC 1881


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 527 RRPALAFVPESEGFA 483
           RRP LA +PES+GFA
Sbjct: 219 RRPILAILPESKGFA 233


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 383 TFGEGPPPVCLXEHGESIRAPASTKRGNSRATSQQSPQ 496
           TF   PPP+ +  +  S   PA+     +++TSQQ P+
Sbjct: 367 TFVRFPPPMQVENYASSRNYPANPFFLQNQSTSQQQPE 404


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 299 GIAEQNDPNQPNELNINDVFEAISLADPTFGEGPPPVCLXEHGESIRAPAS 451
           G   QN P Q    N+N  F   + + P FG       +  +G +++ PA+
Sbjct: 313 GFGIQNQPQQSAFQNLNTQFSLPNNSQPVFGHTSLTQPVNPNGFTVQPPAT 363


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 408 TGGGPSPNVGSASDMASKTSLI 343
           T  GP P VGS ++   K+SLI
Sbjct: 379 TNNGPQPLVGSQNEPLQKSSLI 400


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 551 YSGEQNLSYNQDMLLQGTGHHSRV 622
           +SG  N +YN D LL  TG H+ V
Sbjct: 525 HSGSMN-NYNTDSLLNHTGGHNEV 547


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/76 (22%), Positives = 27/76 (35%)
 Frame = +2

Query: 293 PIGIAEQNDPNQPNELNINDVFEAISLADPTFGEGPPPVCLXEHGESIRAPASTKRGNSR 472
           PIG  E  +P  PN     D  +A S + P F          + G +       ++ +  
Sbjct: 136 PIGATE--NPTIPNSEQTVDTLDAASSSAPNFTHTVSSASSQKQGSTSLTDTENQKAHPA 193

Query: 473 ATSQQSPQIPVQMRGP 520
           A  Q      +Q+  P
Sbjct: 194 AAPQSLTPFYIQVHDP 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,466
Number of Sequences: 5004
Number of extensions: 51004
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)