Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_B20
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 37 0.012
04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073 30 1.8
02_04_0071 + 19457502-19458092,19458558-19458723,19458816-194590... 29 2.4
11_01_0309 + 2312786-2313211,2313311-2313527,2313613-2313731,231... 28 5.5
01_06_0105 + 26507988-26508105,26509398-26509477,26509673-265097... 28 5.5
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 28 7.3
08_02_1018 + 23640889-23641245,23641868-23641954,23642063-236421... 28 7.3
12_01_1113 - 11888691-11888900,11891794-11892243,11892274-118929... 27 9.7
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 27 9.7
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560... 27 9.7
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 323 NQPNELNINDVFEAISLADPTFGEGPPPVCLXEHGESIRAPASTKRGNSRATSQQ 487
NQP+ L+ D+ +A AD + P PV EHGE+++ PA+ + G+S A Q+
Sbjct: 516 NQPSFLSQKDI-DAAREADKLASKSPVPVNTKEHGENVKKPANGE-GSSDAVVQE 568
>04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073
Length = 391
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 329 PNELNINDVFEAISLADPTFGEGP---PPVCLXEHGESIRAPASTKR 460
P +N+VF +SL P G+ P PP+ L +HG + PA+ R
Sbjct: 246 PAGARLNNVFH-VSLMKPFHGDPPYSTPPLPLLDHGRVVPQPAAIVR 291
>02_04_0071 +
19457502-19458092,19458558-19458723,19458816-19459027,
19460103-19460596,19460682-19460730,19460886-19461194
Length = 606
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 287 GLPIGIAEQNDPNQPNELNINDVF 358
G P+G NDPN N +N + VF
Sbjct: 143 GSPVGTIAANDPNDANPMNYDQVF 166
>11_01_0309 +
2312786-2313211,2313311-2313527,2313613-2313731,
2313921-2314019,2314498-2314551,2314635-2314733,
2314838-2314945,2315418-2315694,2316051-2316160,
2316425-2316493,2316608-2316714,2316754-2316792,
2317126-2317171,2317593-2317619
Length = 598
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 380 PTFGEGPPPVCLXEHGESIRAPASTKRGNSRATSQQ 487
P G GPP VCL ++ +P ++ R TS++
Sbjct: 238 PQAGGGPPAVCLNRLNQTPNSPVASGSSAGRKTSKR 273
>01_06_0105 +
26507988-26508105,26509398-26509477,26509673-26509759,
26510446-26510496,26510581-26510698,26510820-26510924,
26511015-26511079,26511554-26511637,26511741-26511791,
26511874-26511936,26512016-26512062,26512155-26512233,
26512365-26512427,26512761-26512850,26512932-26513168,
26513372-26513457,26513664-26513685,26513686-26513766,
26513859-26513952,26514388-26514566
Length = 599
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 257 YYNIIHAGDAGLPIGIAEQNDPNQPNELNINDVFEAISLADPTFGEGPPPVCLXEHGESI 436
Y ++I+ G +G Q P+ +E I D E +++ EGPP VC+ E G +I
Sbjct: 94 YQSVINKERRGDYLGKTIQVVPHITDE--IQDWIERVAMNPVDGKEGPPDVCVIELGGTI 151
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 245 RDSYYYNIIHAGDAGLPIGIAEQNDPNQPNELNINDVFEAISLADP 382
R S+ YN++ +AGLP G Q D + + ++ SL P
Sbjct: 173 RPSFSYNVVSHANAGLPTGQQFQLDTGTNHAVQVSRFVPPSSLQPP 218
>08_02_1018 +
23640889-23641245,23641868-23641954,23642063-23642161,
23642255-23642456,23642569-23642690,23642942-23643226
Length = 383
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 443 PASTKRGNSRATSQQSPQIPV 505
PAST+RG++ A+S P+ PV
Sbjct: 316 PASTRRGSASASSSSVPESPV 336
>12_01_1113 -
11888691-11888900,11891794-11892243,11892274-11892950,
11893396-11893957,11894121-11894207
Length = 661
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Frame = +2
Query: 317 DPNQPNELNINDVFEAISLADPTFGEGPPPVCLXEHGESIRAPASTKRGNSRA-TSQQSP 493
DP++ + + ++ DP G G P + + +R PA T N A TS P
Sbjct: 553 DPDRRQSSRLRSSSQELTQPDPRMGIGKPRGKSAKKLKELRLPAPTNSSNGNASTSSAHP 612
Query: 494 QIPVQMRGPVGGLAPGRVQYSGEQNLSY 577
P +P + Q +
Sbjct: 613 ATHTGREAPRRRRSPAHQVFDTRQRRDF 640
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 377 DPTFGEGPPPVCLXEHGESIRAPASTKRGNSRATSQQSPQIPV 505
+P G+GP + APA RG + A QQ P V
Sbjct: 78 EPAKGKGPAAAATGAAAAASSAPAKRPRGAAAAGQQQCPSCAV 120
>01_05_0343 +
21155237-21155496,21155596-21155842,21155939-21156064,
21156291-21156428,21156513-21156650,21156756-21157013,
21157404-21157541,21158023-21158092,21158267-21158480,
21158614-21158719,21159844-21160077,21160836-21161000,
21161083-21161232,21161308-21161399,21161631-21161712,
21161800-21161883,21161980-21162096,21162179-21162289,
21162698-21162892,21164495-21164575,21165671-21165720,
21165978-21165990,21166518-21166600,21166693-21166833,
21166879-21166936,21167023-21167072,21167474-21167582,
21167666-21167727,21168321-21168363
Length = 1204
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 432 QSAPPRAPSVVIVEQPASKALRFRYKC--EGRSAGSLPGVS 548
Q APP P VI + P + R+ C E +AGS VS
Sbjct: 269 QKAPPSCPPPVIPDFPVPSHVEPRFSCFVESEAAGSAVVVS 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,125,431
Number of Sequences: 37544
Number of extensions: 374072
Number of successful extensions: 1073
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -