Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B18
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    31   0.19 
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    30   0.33 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   1.3  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.3  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.2  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    25   9.5  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +3

Query: 357 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 446
           R++HEA+G+  FG + P     E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -1

Query: 624 TSLRVEVGRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAAL*V-CLYDINGLL 448
           ++LR ++ +     R +A+  L G       G +     G+ ++ +A+ +  L+D+ GL+
Sbjct: 427 STLRSDIEKSSKFSRTNALKTLYGSKPHVFSGSSQRRATGKNIHESAIALFSLHDVPGLM 486

Query: 447 DVLVYRILSNGS 412
           + L+Y+    GS
Sbjct: 487 EELIYKSRGRGS 498


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 174  HELHR*ELLQVRSDRSHHCRHYCFHCRVLRLLWRCQREPLH-DNNVFSIP 320
            HE+ R     V   + HH +     C +  L+  C  E  H DN + +IP
Sbjct: 1594 HEISRFNSQSVFKSKKHHLKSIVVKCTLQLLMLNCLWELFHSDNMLTNIP 1643



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 420  NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 316
            +GS+ + H++ FQ    H T  +  +   EY   E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 367 MKHTDLEDSVMRNLNASITQYPVDKN 444
           +K   +EDS + N+ AS+  + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 635 SLVRHPFEWKLVEFSVQAA 579
           SLVRHP   K++ F +Q+A
Sbjct: 150 SLVRHPHRLKMLPFGIQSA 168


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 275 APQQPKNATMKTIMPTMMRT 216
           AP QPK +   +I+PT+ RT
Sbjct: 810 APVQPKTSQASSILPTVPRT 829


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 306 VFSIPLDHIRG*TGCGHRWLHEAYGL 383
           V ++PLDH+ G +     W +   GL
Sbjct: 55  VLALPLDHVTGSSESMENWFYSILGL 80


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 635 SLVRHPFEWKLVEFSVQAATTPSLISWAEQHVLGMGRP*SAQSAGLFIPQHCKSVCMIS 459
           SL  HP +  L +FS+  A   +L+   +Q  L +G+  +  S+GL    H     +IS
Sbjct: 135 SLCPHPTDGLLTDFSITPALMGNLV--PQQCNLWIGKSENGTSSGLHHDFHDNIYAVIS 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,050
Number of Sequences: 5004
Number of extensions: 49474
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)