Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B18
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    86   2e-19
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 86.2 bits (204), Expect = 2e-19
 Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 2/126 (1%)
 Frame = +1

Query: 265 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNASITQYPVD 438
           CCGA++E+HCM ITF+ FLL I + ++AV +  +  +K+ D   ++          Y ++
Sbjct: 70  CCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLN 129

Query: 439 KNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSK 618
              +  ID IQ +LQCCG++S +D+ D   PIP++CC++ E N       T + +N ++ 
Sbjct: 130 SESKDFIDFIQKNLQCCGVHSLSDYNDK--PIPASCCNSPENN-------TCSISNSYTN 180

Query: 619 GCLTKL 636
           GC+  L
Sbjct: 181 GCVEAL 186



 Score = 27.9 bits (59), Expect = 0.090
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 63  GMSCVKYLMFCFNLLFA 113
           GM  +KYL+F FN +FA
Sbjct: 4   GMGMIKYLLFIFNFVFA 20


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 68  VLCKVPHVLLQ 100
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 68  VLCKVPHVLLQ 100
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 68  VLCKVPHVLLQ 100
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 68  VLCKVPHVLLQ 100
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 68  VLCKVPHVLLQ 100
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 68  VLCKVPHVLLQ 100
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 68  VLCKVPHVLLQ 100
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 68  VLCKVPHVLLQ 100
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 518 SAQSAGLFIPQHCKSVCMISMVFWT 444
           S+QSA + I +   ++C + ++ WT
Sbjct: 264 SSQSAEIRIAKAAITICFLYVLSWT 288


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 573  AVIDLLGGAARARYGQTVIGPVGRTVYTAAL 481
            A+ID L  A R        GP GR+V +A L
Sbjct: 967  ALIDELKPATRYTIRVIAEGPAGRSVPSAEL 997


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 573  AVIDLLGGAARARYGQTVIGPVGRTVYTAAL 481
            A+ID L  A R        GP GR+V +A L
Sbjct: 963  ALIDELKPATRYTIRVIAEGPAGRSVPSAEL 993


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,160
Number of Sequences: 438
Number of extensions: 3361
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)