Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B16
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    28   0.97 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.3  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   9.1  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 577 MERVAEETDILIIGGGPAG 633
           +ER  E+ D+ I+G GPAG
Sbjct: 84  IEREVEDVDVCIVGAGPAG 102


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 418  VVLKMAVAIVSSARQVGRLTNAARRLYSDVYPKITTHYT 534
            + LK+ +  +S  RQV   TN+ +R+ S + P  +  YT
Sbjct: 1044 IYLKVILISISRLRQVDENTNSIKRIVSRLQPLHSRQYT 1082


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 520 TTHYTIHPRDKDPR 561
           T +YTIH R++DP+
Sbjct: 306 TAYYTIHERERDPK 319


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 565 KDVNMERVAEETDILIIGGGPAG 633
           KD++ E  A    I ++GGGP G
Sbjct: 244 KDLSPEERARLLHITVVGGGPTG 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,949
Number of Sequences: 5004
Number of extensions: 45111
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)