Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_B14
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 138 2e-33
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 136 7e-33
01_02_0013 + 10162478-10163581 29 1.6
01_06_0657 - 30940020-30940034,30940226-30940861 29 2.9
01_01_1134 + 8994315-8995892 29 2.9
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 3.8
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 3.8
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 28 5.0
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 27 6.6
04_03_0549 - 17043135-17043351,17043641-17043846 27 6.6
03_06_0019 - 31078669-31080081 27 8.8
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 138 bits (334), Expect = 2e-33
Identities = 71/116 (61%), Positives = 83/116 (71%), Gaps = 8/116 (6%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 342
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48 RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Query: 343 TPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQR 486
PF+QWY +HY + +GRKK A+ E E A K+S RK RQ+
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQ 163
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 69 GKRAPIRKKRKYELGRPAANTRLGPQR 149
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
Score = 30.7 bits (66), Expect = 0.71
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2
Query: 23 MGISRDHWHKRRATG 67
MGISRD HKRRATG
Sbjct: 1 MGISRDSMHKRRATG 15
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 136 bits (330), Expect = 7e-33
Identities = 65/92 (70%), Positives = 76/92 (82%), Gaps = 2/92 (2%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 342
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 48 RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Query: 343 TPFRQWYESHYTLPLGRKKGAKLT--EAEEAI 432
PF+QWY +HY + +GRKK A +AE A+
Sbjct: 108 APFKQWYLTHYGVDIGRKKKAPAAKKDAEHAL 139
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 69 GKRAPIRKKRKYELGRPAANTRLGPQR 149
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
Score = 30.7 bits (66), Expect = 0.71
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2
Query: 23 MGISRDHWHKRRATG 67
MGISRD HKRRATG
Sbjct: 1 MGISRDSMHKRRATG 15
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 176 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 313
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>01_06_0657 - 30940020-30940034,30940226-30940861
Length = 216
Score = 28.7 bits (61), Expect = 2.9
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GSLA*AKGHRXGNVRPYARRGSMS*GVPLQTPGSVLSVSTPXRSRGGNTKYRALRL-DTG 213
G++ A G+R P R GSMS G + GS +S S RG + + A G
Sbjct: 117 GTIGAAAGNRMRGFVPPGRGGSMSNGAGVVGHGSSMSHSAGVSGRGSSMSHGATGYGGFG 176
Query: 214 NFSWGSECSTRKT 252
W + S+ T
Sbjct: 177 GGGWDAGTSSAPT 189
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 211 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 354
G FS C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 205 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 351
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA +VV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 172 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 333
GG T R +R + C +++ ++V++ + NELV T +N I+V
Sbjct: 383 GGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 436
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = -2
Query: 350 NGVASTTTIAFLTRVFVRTNS---LLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLV 180
+G+ ST ++ FL + T + +L+ +YT ++ EH DP + + ++RYL+
Sbjct: 392 SGLQSTQSLPFLEEHDMSTEAFEKVLEYMYTDNL------EHMDPNQAEELFDIASRYLL 445
Query: 179 FP 174
FP
Sbjct: 446 FP 447
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 185 STVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 292
+ + C+W + SLG R Q++K + L ++ + +N
Sbjct: 286 TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 375 IMRLIPLPEWSCIYYNNCILDKGL 304
++ L+ +P+WS +YY N +DK L
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKL 95
>03_06_0019 - 31078669-31080081
Length = 470
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 132 WCLQRDALTHTSSSCVWAH 76
WC QR L H S++C +H
Sbjct: 340 WCPQRRVLAHASTACFVSH 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,358,112
Number of Sequences: 37544
Number of extensions: 271593
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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