Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B09
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    30   0.33 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.76 
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   3.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.1  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.4  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   7.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.4  

>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +1

Query: 238 DPVTKQNIPPKPESKLAPLAPYVS-----PREQTRARVLSTVG 351
           DPVTKQ+IP + +  L+  A Y+S      REQ+R   L  +G
Sbjct: 163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALG 205


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +1

Query: 148  VPFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNI--PPKPESKLAPLAP 300
            +P VP+PS+   PV        P    S   PV K ++  PP P    AP  P
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143



 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +1

Query: 151  PFVPRPSL----VPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAP 300
            P VP+PS+    VP P +      KP      + P ++    PKP   + P+ P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 238 DPVTKQNIPPKPESKLAPLAPYVS-----PREQTRARVLSTVG 351
           DP TKQ+IP      L+  A Y+S      REQ+R   L ++G
Sbjct: 163 DPKTKQHIPYSERKSLSGTARYMSINTHLGREQSRRDDLESLG 205


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +1

Query: 160  PRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRAR 333
            P P L     TA  R  +P  +       TK    P  +SK AP+A  VS  +QT+ R
Sbjct: 970  PFPRLATGGSTAAARGPRPVVQNK--PAATKPVSMPAAKSKPAPMANPVSTAQQTQNR 1025


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 271 PESKLAPLAPYVSPREQTRARVLSTVGQRERA 366
           PES +  +   VS   Q RA +L + G+R+ A
Sbjct: 198 PESVVMAMHQQVSAERQKRAEILESEGKRQAA 229


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = +1

Query: 94  PYRSTYSVTRSTLGDWEKVPFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKP 273
           P  ST+    S    +    F P P +    + A G     G       P  +Q+I P P
Sbjct: 287 PPASTFPSYNSNFTGFLPSSFNPSPLMTLSRLAA-GEPDNNGKVYYSYGPTQEQSILPLP 345

Query: 274 ESKLAPLAPY 303
           E+K   L PY
Sbjct: 346 ENKHEGLPPY 355


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 166  PSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAP 300
            P++   P    G    P T +    P  +Q   P P + +AP +P
Sbjct: 921  PAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSP 965


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,123
Number of Sequences: 5004
Number of extensions: 35717
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)