Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B07
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1256 + 32124826-32124946,32125388-32125554,32125731-321259...    28   2.3  
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13...    27   3.1  
05_01_0188 - 1357074-1357098,1357811-1357941,1358572-1358667,135...    27   4.0  
02_02_0050 + 6384865-6384988,6385086-6385159,6386082-6386243           27   5.3  
04_04_1258 + 32165918-32166041,32167218-32167384,32167569-321677...    26   7.1  
04_04_1252 + 32093522-32093642,32093912-32094078,32094832-320950...    26   7.1  
11_06_0359 - 22683236-22683484,22684069-22684263,22684450-226847...    26   9.3  
03_04_0133 + 17585278-17585282,17586257-17586386,17587444-175875...    26   9.3  

>04_04_1256 +
           32124826-32124946,32125388-32125554,32125731-32125934,
           32126063-32126222,32126379-32126592,32126707-32126854
          Length = 337

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -1

Query: 211 FI*YAMENIECDLPEDQNVNFGLI*TINVFLNTINASRIKRPAVVTVVAKLIL 53
           F+  A  N++ + PE + +  G+  T+NV  + + A  +KR  + +  A + L
Sbjct: 82  FLVAAPVNLQSENPEKEMIEAGVQGTLNVMRSCLRAGTVKRVILTSSAAAVAL 134


>07_01_0020 -
           127855-129156,129240-129365,129811-129865,130047-130177
          Length = 537

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 71  HGNNSGALDARSVYCIQKYVYC 136
           HGN +G LD     C   Y YC
Sbjct: 95  HGNGNGILDKIEAACSSSYSYC 116


>05_01_0188 -
           1357074-1357098,1357811-1357941,1358572-1358667,
           1358736-1358769,1358867-1358958,1359273-1359332,
           1359376-1359435,1360016-1360525,1360645-1360719,
           1360809-1361015
          Length = 429

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 225 QKKIHLFNTQWKTSSAIFLKIKT 157
           ++K++LFN  WKT S++  K  T
Sbjct: 345 KEKMNLFNLSWKTGSSVASKATT 367


>02_02_0050 + 6384865-6384988,6385086-6385159,6386082-6386243
          Length = 119

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 88 PAVVTVVAKLILVSSPPLAFAIRTADD 8
          PA++T++A  +L+  PPLA    T  D
Sbjct: 4  PAIITILAVSLLLLLPPLALGSITGGD 30


>04_04_1258 +
           32165918-32166041,32167218-32167384,32167569-32167769,
           32168472-32168631,32168729-32168942,32169160-32169307
          Length = 337

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -1

Query: 211 FI*YAMENIECDLPEDQNVNFGLI*TINVFLNTINASRIKRPAVVTVVAKLILVSSPPLA 32
           F+  A  N +   PE + +  G+  T+NV  + + A  +KR   V + +    VS  PL 
Sbjct: 83  FLVAAPVNFQSQNPEKELIEAGVQGTMNVMRSCVRAGTVKR---VILTSSAPAVSGRPLQ 139

Query: 31  FAIRTADDD 5
                 D+D
Sbjct: 140 GDGHVLDED 148


>04_04_1252 +
           32093522-32093642,32093912-32094078,32094832-32095050,
           32095143-32095302,32095696-32095825,32095998-32096151
          Length = 316

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -1

Query: 211 FI*YAMENIECDLPEDQNVNFGLI*TINVFLNTINASRIKRPAVVTVVAKLILVSSPPL 35
           F+  A  N++   PE + +  G+  T+NV  + + A  +KR   V + +    VS  PL
Sbjct: 82  FLVAAPMNLKSQNPEKELLEAGVQGTLNVLRSCVKAGTVKR---VILTSSAAAVSGQPL 137


>11_06_0359 -
           22683236-22683484,22684069-22684263,22684450-22684734,
           22686424-22686624,22688853-22689107,22689178-22689328,
           22689466-22689535,22690176-22690434,22691333-22691461
          Length = 597

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 133 INVFLNTINASRIKRPAVVTVVAKL 59
           I + L  + A R+KRP +  VV++L
Sbjct: 235 IEMALQCVEAQRLKRPTIAEVVSRL 259


>03_04_0133 +
           17585278-17585282,17586257-17586386,17587444-17587591,
           17587661-17587849,17587999-17589150,17589303-17589466
          Length = 595

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 5   VIVCRSNCKSEWR*RN*NKFSDHGNNSGALDARSVYCIQKYV 130
           VI   S+C   W         DHG + G  D  S+ C++++V
Sbjct: 297 VIEMPSSCSVAW-------VGDHGRDCGCSDEGSIRCVRRHV 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,419,846
Number of Sequences: 37544
Number of extensions: 77185
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)