Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B07
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    26   6.4  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    26   6.4  
AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical...    26   8.5  

>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical protein
            C25F9.2 protein.
          Length = 1469

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 209  YLIRNGKHRVXXXXXXXX*LWLNINNKRIFEYNKRFAHQAPRC 81
            Y +R G+H++            N     +FE    F H  PRC
Sbjct: 935  YQLRGGEHKIEANGRTYFADGFNEKTNEVFEVYGCFHHGCPRC 977


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoformb protein.
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 103 SRIKRPAVVTVVAKLILVSSPPLAFAIRTADD 8
           SR+++   +T+V   IL+  PP ++A  TA +
Sbjct: 424 SRVEKIIELTLVKTAILMQKPPTSYAAATASN 455


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoforma protein.
          Length = 1418

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 103 SRIKRPAVVTVVAKLILVSSPPLAFAIRTADD 8
           SR+++   +T+V   IL+  PP ++A  TA +
Sbjct: 424 SRVEKIIELTLVKTAILMQKPPTSYAAATASN 455


>AL161712-10|CAC35900.1|  533|Caenorhabditis elegans Hypothetical
           protein Y66D12A.13 protein.
          Length = 533

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 120 KNTFI-VYIKPKLTF*SSGRSHSMFSIAY 203
           K +FI +YI PK+T  +   S SMFS++Y
Sbjct: 305 KYSFIHLYIHPKITVQTVVASISMFSVSY 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,016,337
Number of Sequences: 27780
Number of extensions: 80163
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)