Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B05
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   1.8  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   3.1  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   5.4  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   9.5  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   9.5  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    25   9.5  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 369 NKANYACKSFDVAAPMKKPASPTYQVVKQQEQKKDYGSWGPVFKDKK 509
           N A      F  +AP  + A  TYQ++K+ E   +  ++GP++ + K
Sbjct: 409 NDATKRKLDFMSSAPGWEDAYQTYQLLKEYESAFEAPAYGPIYMNLK 455


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 44  HGV*FSKYNDKPQVSMTKSKRKYAITDKFLPRLAKNLCTRKGSRRANTGNRLEHAVL 214
           H +    Y D+ Q  ++K + +YA+   F       LC +   R   TG++ E   L
Sbjct: 108 HQITLRSYRDRTQ-GLSKDQFRYALWPDFSSNSKDTLCPQPMPRLMKTGDKEEQFAL 163


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 228 CWMWVSTACSRRFPV 184
           C++WVS AC R+F V
Sbjct: 710 CFLWVSGACVRQFGV 724


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = -3

Query: 183 LARRLP-----FLVHRFLASLGKNLSVIAYFLFDFVI 88
           + RR+P     F+   F++S+G  +S+++ FLF +V+
Sbjct: 442 MPRRIPDYPEAFVGWNFVSSIGSVISILSLFLFMYVM 478


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 82  GVNDKIEEKIRDHRQILAKTRQKPV 156
           G ++K+ +K  DH+  L KT  +PV
Sbjct: 154 GFHEKVIQKTYDHKLCLRKTISEPV 178


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 389 ASVIGLVGGLAFISTSHGC 333
           A VIG +G   +++ +HGC
Sbjct: 327 APVIGKIGSSIYVAAAHGC 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,205
Number of Sequences: 5004
Number of extensions: 52912
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)