Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_B05
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0265 - 21788531-21789798,21789914-21789947 32 0.34
01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369... 32 0.46
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 29 2.4
11_06_0546 + 24853167-24853880 29 3.2
11_06_0113 + 20248749-20248944,20249311-20250314 29 3.2
07_03_1639 + 28305801-28305958,28306240-28306249 29 3.2
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 29 3.2
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 28 5.6
06_03_0142 + 17208577-17209485,17209578-17210195 28 5.6
06_03_0080 - 16320459-16320839,16321405-16321524,16321929-163220... 28 5.6
05_07_0215 - 28455890-28457095 28 5.6
06_03_1060 - 27275799-27275957,27276017-27276187,27276372-272764... 28 7.4
04_04_1487 - 33919654-33920399,33920676-33920817 28 7.4
02_01_0241 + 1595188-1595498,1596621-1596654,1596791-1596979,159... 28 7.4
05_04_0398 - 20946852-20947214 27 9.8
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 27 9.8
>11_06_0265 - 21788531-21789798,21789914-21789947
Length = 433
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 217 GEYRVF*AVPSIGAATTLPGAQVFGESWQEFVGDRVFSLRF 95
G+ + + V S+G L + F ESW +FVG RVF L F
Sbjct: 298 GDRQTYNLVQSLGKLLLL--VRYFRESWDQFVGVRVFELSF 336
>01_01_0505 -
3695937-3695972,3696251-3696316,3696658-3696747,
3696934-3697143,3697371-3697404,3697566-3697912
Length = 260
Score = 31.9 bits (69), Expect = 0.46
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 372 CWRSCIH-LHEPWLLAFNFISF 310
CW+ C+ +H WLLAF +SF
Sbjct: 71 CWKPCLEQIHPGWLLAFRVVSF 92
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 437 SW*SWLLHRSGHIKRLASVIGLVGGLAFISTSHG 336
SW W L + ++RLA+ +G VGG+A + S G
Sbjct: 130 SW-LWWLETAADLRRLATAVGDVGGVAAVVGSGG 162
>11_06_0546 + 24853167-24853880
Length = 237
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 1 VWNFVXLNCSPTDTSRSLVFEIQR*TAGVNDKIEEKIRDHRQILAKTRQKPVHQE 165
VW+F +N + ++ E++ V D++ ++I+ HR+ T ++P HQ+
Sbjct: 135 VWSFTKMNSLSGIKNLPMLKELEFNGDHVPDQVRDEIKAHRKQPILTLKQPQHQD 189
>11_06_0113 + 20248749-20248944,20249311-20250314
Length = 399
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 13 VXLNCSPTDTSRSLVFEIQR*T----AGVNDKIEEKIRDHRQILAKTRQKPVH 159
V + C PT R VFE+ R + G +D + K+R ++ R P+H
Sbjct: 228 VVVGCCPTADERRPVFELVRASQDVIPGTDDAVVVKVRQEGVVITMHRDVPLH 280
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +2
Query: 65 YNDKPQVSMTKSKRKYAITDKFLPRLAKNLCT--RKGSRR 178
Y + PQV K+ RK ++D+F +LAK++ + RK SRR
Sbjct: 15 YGEYPQVQAEKA-RKRTLSDQFEAKLAKSMASQERKISRR 53
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 271 DGGEGSSGTWRLGHVLDVGEYRVF*AVPSIGAAT 170
DGGE G WRL V V E ++ A+ I AT
Sbjct: 308 DGGEERRGAWRLATVTQVEETKLVLAMVPIWVAT 341
>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 35 QTHHGV*FSKYNDKPQVSMTKSKRKYAITDKFLPRLAKNLCTRKGSR 175
+ HH + +Y D +S K +Y I+D+FLP A +L GSR
Sbjct: 936 EIHHKL---RYTDDALISAAKLSYQY-ISDRFLPDKAIDLIDEAGSR 978
>06_03_0142 + 17208577-17209485,17209578-17210195
Length = 508
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -2
Query: 193 VPSIGAATTLPGAQVFGESWQEFVGDRVFS 104
+P + ATTL A+VF ES EF+ DRV S
Sbjct: 231 LPRVMCATTLHRAEVFVESVMEFM-DRVIS 259
>06_03_0080 -
16320459-16320839,16321405-16321524,16321929-16322072,
16322493-16322544,16323009-16323100,16323912-16324014,
16324237-16324300,16324559-16324973
Length = 456
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 355 NARPPTRPITLASLLMWPLL 414
N++PP P+ L ++ +WPL+
Sbjct: 181 NSKPPDAPVLLVNIPLWPLI 200
>05_07_0215 - 28455890-28457095
Length = 401
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 269 IVHPPSTGVVLTRVKEIKLNASSHGSWR*MQDRQQGQLRLQVF*CGRSYEEASFTNLPGG 448
++ P S V +KE + SW + + G++ C RSYE A++ L G
Sbjct: 282 LLSPASAFRVFQMIKERLHDGQVRYSWEELTTKLDGRMLFVGQGCSRSYEAANYPGLDAG 341
>06_03_1060 -
27275799-27275957,27276017-27276187,27276372-27276460,
27277381-27277474
Length = 170
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 345 EPWLLAFNFISFTRVNTTPVEGGW 274
+P L F +FT++N +P E GW
Sbjct: 115 KPGFLTICFCNFTQINGSPYEKGW 138
>04_04_1487 - 33919654-33920399,33920676-33920817
Length = 295
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 295 DTGGRRMDDGGEGSSGTWRLGHVLDVGEYRV 203
D GG ++ +GG+G+ G R + D G +V
Sbjct: 103 DAGGEKVGEGGDGTIGGGRARELADAGGEKV 133
>02_01_0241 +
1595188-1595498,1596621-1596654,1596791-1596979,
1597956-1598045,1598136-1598201,1598680-1598892
Length = 300
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 369 WRSCIH-LHEPWLLAFNFISF 310
WR C+ +H WLL + ISF
Sbjct: 60 WRPCLRDIHPAWLLGYRLISF 80
>05_04_0398 - 20946852-20947214
Length = 120
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 288 VEGGWTMXXXXXXXXXXXGTCWMWVSTAC-SRRFPVLARRLP 166
V GGW + M + TAC SRR+P L R P
Sbjct: 53 VHGGWVLTGMRRKQRPPAQLAGMEIGTACSSRRWPQLLTRRP 94
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 441 GKLVKLASS*ERPHQKTCKRN-WPCWRSCIHLHEPWLLAFNF 319
GK +KL+S +R ++ C WP C+ HE +L++ F
Sbjct: 1576 GKKIKLSSE-DRTYRCDCLEPVWPSRYHCLTCHETYLISTEF 1616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,252,604
Number of Sequences: 37544
Number of extensions: 394309
Number of successful extensions: 1056
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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