Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B05
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   1.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.8  

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 559 IIIALSLSIVTSLYYNFFIPCHCQ 630
           I + LS+ ++TS +    +PC+C+
Sbjct: 8   IYLFLSVILITSYFVTPVMPCNCK 31


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 141 SLGKNLSVIAYFLFDFVIDTCGLSL 67
           S G  +     F+F+FV   CGL +
Sbjct: 2   SCGMGMIKYLLFIFNFVFAVCGLGI 26


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 259 PHPHRPSAFH 288
           PH H PS +H
Sbjct: 318 PHQHHPSQYH 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,141
Number of Sequences: 438
Number of extensions: 3582
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)