Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B02
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    66   4e-12
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    46   6e-06
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   1.0  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   3.1  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.1  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   7.2  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 46/150 (30%), Positives = 67/150 (44%)
 Frame = +1

Query: 199 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 378
           L +E ++ LP  V+RRI  LR LQK + D+E++F  E+                 R+ +V
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122

Query: 379 NGTYEPNDDECLNPWRDDTEXEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPXFW 558
            G  EP ++E         +  E A   +    T  E KK +         + KGIP FW
Sbjct: 123 RGADEPTEEEI--------KKGEAADENEKKEPTSSESKKQEGG------DDTKGIPEFW 168

Query: 559 YNIFRNVSMLXEMMQEHDEPILKCLQDIKV 648
               +NV  L EM+   DE  L  L DI++
Sbjct: 169 LTAMKNVLSLSEMITPEDEGALSHLVDIRI 198


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 8/172 (4%)
 Frame = +1

Query: 154 SGVTRNE--MIAAITNRLHAEA------MASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 309
           SG+ RN   M++ I  RL +        + SL P V+ RI AL+ LQK+   I+ +F  +
Sbjct: 56  SGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQK 115

Query: 310 VHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEXEELARAVQNAAITEGE 489
           +                 RA I+ G  EP D        D+ + EE     QN       
Sbjct: 116 MLDLETKYEKKYQPIFSRRAEIIKGVSEPVD--------DELDHEE--EIFQNNL----- 160

Query: 490 EKKDDKAIEPPMDPNVKGIPXFWYNIFRNVSMLXEMMQEHDEPILKCLQDIK 645
                        P+ KGIP FW     NV ++ EM+   DE +L+ L DI+
Sbjct: 161 -------------PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 GHHKSPSCRSDGIPTPECSSANPRLENSSEGVCRH*GQVL 302
           GHHK+P CR+  +      S N R E   + V RH G V+
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH-GDVI 520


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -3

Query: 537 YIGIH-WRLDSLVILLFLTLSDGSI---LYRPS*LFXFSVITPWVETFIIIRFIC 385
           Y G+  + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 463 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 549
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 510 YRASNGSQCKGYPXLLVQHIQEC 578
           YR SNG   + Y  L V+ IQ C
Sbjct: 489 YRLSNGKSIQYYSTLFVRLIQSC 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,656
Number of Sequences: 5004
Number of extensions: 43149
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)